NCBI

Mammals

Primates

Scientific name	Common name	Build	Tools
Callithrix jacchus	white-tufted-ear marmoset	Annotation Release 101
Gorilla gorilla	western gorilla	Annotation Release 100
Homo sapiens	human	Annotation Release 106
		Annotation Release 105
Macaca fascicularis	crab-eating macaque	Annotation Release 100
Macaca mulatta	rhesus macaque	Build 1.2
Nomascus leucogenys	northern white-cheeked gibbon	Annotation Release 101
		Build 1.1
Otolemur garnettii	small-eared galago	Annotation Release 100
Pan paniscus	pygmy chimpanzee	Annotation Release 100
Pan troglodytes	chimpanzee	Annotation Release 102
		Build 2.1
Papio anubis	olive baboon	Annotation Release 100
Pongo abelii	Sumatran orangutan	Annotation Release 101
Saimiri boliviensis	Bolivian squirrel monkey	Annotation Release 100

Rodents

Scientific name	Common name	Build	Tools
Cavia porcellus	domestic guinea pig	Annotation Release 101
Chinchilla lanigera	long-tailed chinchilla	Annotation Release 100
Cricetulus griseus	Chinese hamster	Build 1.1
Heterocephalus glaber	naked mole-rat	Annotation Release 100
Ictidomys tridecemlineatus	thirteen-lined ground squirrel	Annotation Release 100
Jaculus jaculus	lesser Egyptian jerboa	Annotation Release 100
Mesocricetus auratus	golden hamster	Annotation Release 100
Microtus ochrogaster	prairie vole	Annotation Release 100
Mus musculus	laboratory mouse	Annotation Release 104
		Build 37.2
Octodon degus	degu	Annotation Release 100
Rattus norvegicus	rat	Annotation Release 104
		RGSC v3.4

Monotremes

Scientific name	Common name	Build	Tools
Ornithorhynchus anatinus	platypus	Build 1.2

Marsupials

Scientific name	Common name	Build	Tools
Monodelphis domestica	opossum	Build 2.2
Sarcophilus harrisii	Tasmanian devil	Annotation Release 100

Other Mammals

Scientific name	Common name	Build	Tools
Ailuropoda melanoleuca	giant panda	AilMel_1.0
Bos taurus	cattle	Annotation Release 103
		5.2
Bubalus bubalis	river buffalo
Canis lupus familiaris	dog	Annotation Release 103
		Build 2.2
Capra hircus	goat	Annotation Release 100
Ceratotherium simum simum	southern white rhinoceros	Annotation Release 100
Condylura cristata	star-nosed mole	Annotation Release 100
Dasypus novemcinctus	nine-banded armadillo	Annotation Release 100
Echinops telfairi	small Madagascar hedgehog	Annotation Release 100
Equus caballus	horse	Annotation Release 101
Felis catus	cat	Annotation Release 100
Mustela putorius furo	ferret	Annotation Release 100
Ochotona princeps	American pika	Annotation Release 100
Odobenus rosmarus divergens	Pacific walrus	Annotation Release 100
Orcinus orca	killer whale	Annotation Release 100
Oryctolagus cuniculus	rabbit	OryCun2.0
Ovis aries	sheep	Annotation Release 100
Sorex araneus	European shrew	Annotation Release 100
Sus scrofa	pig	Annotation Release 104
		Sscrofa9.2
Trichechus manatus latirostris	Florida manatee	Annotation Release 100
Tursiops truncatus	bottlenosed dolphin	Annotation Release 100

Birds

Scientific name	Common name	Build	Tools
Anas platyrhynchos	mallard	Annotation Release 100
Columba livia	rock pigeon	Annotation Release 100
Falco cherrug	Saker falcon	Annotation Release 100
Falco peregrinus	peregrine falcon	Annotation Release 100
Ficedula albicollis	collared flycatcher	Annotation Release 100
Gallus gallus	chicken	Annotation Release 102
		Build 2.1
Geospiza fortis	medium ground-finch	Annotation Release 100
Meleagris gallopavo	turkey	Build 1.1
Melopsittacus undulatus	budgerigar	Annotation Release 100
Pseudopodoces humilis	Tibetan ground-tit	Annotation Release 100
Taeniopygia guttata	zebra finch	Annotation Release 101
Zonotrichia albicollis	white-throated sparrow	Annotation Release 100

Other Vertebrates

Scientific name	Common name	Build	Tools
Anolis carolinensis	green anole	Build 1.1
Chrysemys picta	painted turtle	Annotation Release 100
Danio rerio	zebrafish	Annotation Release 103
		Zv8
Maylandia zebra	zebra mbuna	Annotation Release 100
Oreochromis niloticus	Nile tilapia	Annotation Release 101
Oryzias latipes	Japanese medaka	Annotation Release 100
Pundamilia nyererei		Annotation Release 100
Takifugu rubripes	Fugu	Annotation Release 100
Xenopus (Silurana) tropicalis	western clawed frog	Annotation Release 101
		Build 1.1

Insects

Scientific name	Common name	Build	Tools
Acyrthosiphon pisum	pea aphid	Build 2.1
		Build 1.1
Aedes aegypti	yellow fever mosquito	Aedes_aegypti_1.1
Anopheles gambiae	African malaria mosquito	Annotation Release 101
Apis florea	little honeybee	Annotation Release 100
Apis mellifera	honey bee	Amel_4.5
		Amel_4.0
Bombus terrestris	buff-tailed bumblebee	Bter_1.0
Drosophila melanogaster	fruit fly	Release 5.30
Drosophila pseudoobscura		Release 2.3
Drosophila virilis		Release 1.2
Megachile rotundata	alfalfa leafcutting bee	Annotation Release 100
Nasonia vitripennis	jewel wasp	Build 2.1
		Build 1.1
Tribolium castaneum	red flour beetle	Build 2.1

Nematode

Scientific name	Common name	Build	Tools
Caenorhabditis briggsae		Build 1.1
Caenorhabditis elegans	nematode	WS195
		WS190

Echinoderms

Scientific name	Common name	Build	Tools
Strongylocentrotus purpuratus	purple sea urchin	Annotation Release 100
		Build 2.1

Cnidaria

Scientific name	Common name	Build	Tools
Hydra magnipapillata		Annotation Release 101
		Build 1.1

Other Invertebrates

Scientific name	Common name	Build	Tools
Amphimedon queenslandica		v1.0
Aplysia californica	California sea hare	Annotation Release 100
Ciona intestinalis	vase tunicate	Annotation Release 101
		Build 1.1
Metaseiulus occidentalis	western predatory mite	Annotation Release 100
Saccoglossus kowalevskii		Build 1.1

Flowering Plants

Monocots

Scientific name	Common name	Build	Tools
Aegilops tauschii
Aegilops umbellulata
Allium cepa	onion
Asparagus officinalis	asparagus
Avena atlantica x Avena hirtula
Avena strigosa x Avena wiestii
Brachypodium distachyon		Build 1.1
Cenchrus americanus	pearl millet
Cocos nucifera	coconut palm
Elaeis guineensis	African oil palm
Eleusine coracana	finger millet
Eragrostis tef	tef
Festuca pratensis	meadow ryegrass
Hordeum bulbosum
Hordeum vulgare	barley
Lolium perenne	ryegrass
Musa acuminata	dwarf banana
Oryza latifolia
Oryza sativa	rice	RAP Build 3
Secale cereale	rye
Setaria italica	foxtail millet	Annotation Release 100
Sorghum bicolor	sorghum	Sorbi1
Triticum aestivum	wheat
Triticum turgidum	durum wheat
Zea mays	maize

Eudicots

Scientific name	Common name	Build	Tools
Acacia mangium
Antirrhinum majus	snapdragon
Antirrhinum majus x Antirrhinum molle
Apium graveolens
Arabidopsis lyrata	lyrate rockcress	Arabidopsis lyrata v1.0
Arabidopsis thaliana	thale cress	TAIR10
Arachis duranensis x Arachis stenosperma
Arachis stenosperma x Arachis cardenasii
Beta vulgaris	beet
Betula pendula	European white birch
Boechera stricta
Brassica juncea	brown mustard
Brassica napus	rapeseed
Brassica nigra	black mustard
Brassica oleracea
Brassica rapa	field mustard
Camellia sinensis	black tea
Capsicum annuum	pepper
Capsicum annuum x Capsicum chinense
Capsicum annuum x Capsicum frutescens
Carica papaya	papaya
Carya illinoinensis	pecan
Castanea dentata x Castanea mollissima
Cicer arietinum	chickpea	Annotation Release 100
Citrus maxima	yu
Coffea canephora	robusta coffee
Corylus avellana	European hazelnut
Cucumis melo	muskmelon
Cucumis sativus	cucumber	Annotation Release 100
Cynara cardunculus var. scolymus	globe artichoke
Daucus carota	carrot
Eucalyptus globulus	blue gum
Eucalyptus grandis
Eucalyptus grandis x Eucalyptus urophylla
Eucalyptus nitens
Eucalyptus urophylla
Fragaria vesca	wild strawberry	Annotation Release 100
Fragaria vesca x Fragaria nubicola
Glycine max	soybean	Build 1.1
Helianthus annuus	common sunflower
Hevea brasiliensis	siringa
Lablab purpureus	natoba
Lens culinaris	lentil
Limnanthes alba	white meadowfoam
Lotus japonicus	birdsfoot deervetch
Lupinus angustifolius	narrow-leaved blue lupine
Manihot esculenta	cassava
Medicago sativa	alfalfa
Medicago truncatula	barrel medic	Build 1.1
Nicotiana acuminata	acuminate tobacco
Nicotiana tabacum	common tobacco
Nicotiana tomentosiformis
Phaseolus vulgaris	kidney bean
Populus trichocarpa	poplar	Build 2.3
Prunus armeniaca	apricot
Prunus cerasifera	cherry plum
Prunus dulcis	sweet almond
Prunus dulcis x Prunus persica
Prunus persica	peach
Prunus persica x Prunus dulcis
Pyrus communis	pear
Pyrus pyrifolia	sha li
Quercus robur	oak
Rosa chinensis	China rose
Rosa hybrid cultivar
Rosa lucieae	memorial rose
Rosa multiflora	Japanese rose
Rubus idaeus	red raspberry
Salix viminalis	osier
Silene vulgaris	bladder campion
Solanum lycopersicoides	nightshade
Solanum lycopersicum	tomato	Annotation Release 100
Solanum melongena	eggplant
Solanum peruvianum	Peruvian tomato
Solanum tuberosum	potato
Theobroma cacao	cocoa
Trifolium pratense	rotklee
Turnera subulata x Turnera krapovickasii
Vigna angularis	adzuki bean
Vigna radiata	mungbean
Vigna umbellata	rice-bean
Vigna unguiculata	cowpea
Vitis vinifera	wine grape	IGGP build 2
		IGGP build 1

Conifers

Cypress

Scientific name	Common name	Build	Tools
Cryptomeria japonica	Japanese cedar

Firs

Scientific name	Common name	Build	Tools
Pseudotsuga menziesii	Douglas-fir

Pines

Scientific name	Common name	Build	Tools
Pinus elliottii	slash pine
Pinus pinaster	maritime pine
Pinus sylvestris	Scots pine
Pinus taeda	loblolly pine
Pinus thunbergii	Japanese black pine

Spruce

Scientific name	Common name	Build	Tools
Picea abies	Norway spruce
Picea glauca	white spruce

Algae

Green Algae

Scientific name	Common name	Build	Tools
Chlamydomonas reinhardtii		Build 1.1
Ostreococcus 'lucimarinus'		Build 2.0

Red Algae

Scientific name	Common name	Build	Tools
Guillardia theta		Build 1.0
Hemiselmis andersenii		Build 1.1

Moss

Scientific name	Common name	Build	Tools
Physcomitrella patens		Build 1.1