BioJS

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BioJS
BioJS Logo
Initial release 2012
Development status Active
Written in JavaScript
Operating system Any
Platform Cross-platform
Type Bioinformatics
License Apache 2
Website biojs.net

BioJS.[1] is an open source project for bioinformatics data on the web. Its mission is to develop an open-source library of JavaScript components to visualise biological data.[2] BioJS develops and maintains small building blocks (components) which can be reused by others. For a discovery of available components, BioJS maintains a registry.

Selected list of published components[edit]

  • DAG Viewer[3]
  • DNA Content Viewer[4]
  • FeatureViewer[5]
  • HeatMapViewer[6]
  • Intermine analysis[3]
  • Intermine endpoints[3]
  • KEGGViewer[7]
  • PPI-Interactions[8]
  • PsicquicGraph[7]
  • Sequence[9]
  • wigExplorer[10]
  • treeWidget[11]

Institutions using BioJS[edit]

See also[edit]

Portal icon Free software portal
Portal icon Biology portal

References[edit]

  1. ^ Corpas, Manuel; Jimenez, Rafael; Carbon, Seth J; García, Alex; Garcia, Leyla; Goldberg, Tatyana; Gomez, John; Kalderimis, Alexis; Lewis, Suzanna E; Mulvany, Ian; Pawlik, Aleksandra; Rowland, Francis; Salazar, Gustavo; Schreiber, Fabian; Sillitoe, Ian; Spooner, William H; Thanki, Anil; Villaveces, José M; Yachdav, Guy; Hermjakob, Henning (2014). "BioJS: an open source standard for biological visualisation – its status in 2014". F1000Research. doi:10.12688/f1000research.3-55.v1. ISSN 2046-1402. 
  2. ^ "BioJS Vision and Mission". BioJS. Retrieved 29 August 2014. 
  3. ^ a b c Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs". F1000Research. doi:10.12688/f1000research.3-51.v1. ISSN 2046-1402. 
  4. ^ Thanki, Anil S.; Caim, Shabhonam; Corpas, Manuel; Davey, Robert P. (2014). "DNAContentViewer a BioJS component to visualise GC/AT Content". F1000Research. doi:10.12688/f1000research.3-54.v1. ISSN 2046-1402. 
  5. ^ Garcia, Leyla; Yachdav, Guy; Martin, Maria-Jesus (2014). "FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences". F1000Research. doi:10.12688/f1000research.3-47.v2. ISSN 2046-1402. 
  6. ^ Yachdav, Guy; Hecht, Maximilian; Pasmanik-Chor, Metsada; Yeheskel, Adva; Rost, Burkhard (2014). "HeatMapViewer: interactive display of 2D data in biology". F1000Research. doi:10.12688/f1000research.3-48.v1. ISSN 2046-1402. 
  7. ^ a b Villaveces, Jose M.; Jimenez, Rafael C.; Habermann, Bianca H. (2014). "KEGGViewer, a BioJS component to visualize KEGG Pathways". F1000Research. doi:10.12688/f1000research.3-43.v1. ISSN 2046-1402. 
  8. ^ Salazar, Gustavo A.; Meintjes, Ayton; Mulder, Nicola (2014). "PPI layouts: BioJS components for the display of Protein-Protein Interactions". F1000Research. doi:10.12688/f1000research.3-50.v1. ISSN 2046-1402. 
  9. ^ Gomez, John; Jimenez, Rafael (2014). "Sequence, a BioJS component for visualising sequences". F1000Research. doi:10.12688/f1000research.3-52.v1. ISSN 2046-1402. 
  10. ^ Thanki, Anil S.; Jimenez, Rafael C.; Kaithakottil, Gemy G.; Corpas, Manuel; Davey, Robert P. (2014). "wigExplorer, a BioJS component to visualise wig data". F1000Research. doi:10.12688/f1000research.3-53.v2. ISSN 2046-1402. 
  11. ^ Schreiber, Fabian (2014). "treeWidget: a BioJS component to visualise phylogenetic trees". F1000Research. doi:10.12688/f1000research.3-49.v1. ISSN 2046-1402. 

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