Topic: singularity

sylabs / singularity

Singularity: Application containers for Linux

containers container singularity-container portable linux hpc parallel singularity science reproducible reproducible-science portability rootless-containers cloud-native

Go Updated Mar 30, 2019 13 issues need help

nextflow-io / nextflow

756

A DSL for data-driven computational pipelines

bioinformatics workflow-engine pipeline pipeline-framework nextflow cloud data-flow groovy sge slurm aws docker singularity hpc singularity-containers reproducible-science reproducible-research

Groovy Updated Mar 28, 2019 14 issues need help

Azure / batch-shipyard

179

Provision, execute, and monitor batch and HPC container workloads on Azure Batch

azure-batch docker hpc mpi gpu infiniband rdma azure batch-processing nfs glusterfs azure-functions containers singularity windows-containers serverless slurm

Python Updated Mar 22, 2019

NVIDIA / hpc-container-maker

128

HPC Container Maker

containers hpc docker singularity

Python Updated Mar 29, 2019

SciLifeLab / Sarek

92

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

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Nextflow Updated Mar 29, 2019

singularityware / docker2singularity

71

A docker image for converting docker images to singularity images.

docker-image singularity singularity-images docker

Shell Updated Dec 18, 2018

sylabs / singularity-cri

33

The Singularity implementation of the Kubernetes Container Runtime Interface

singularity-cri cri singularity kubernetes hpc

Go Updated Mar 29, 2019 3 issues need help

singularityhub / sregistry

29

server for storage and management of singularity images

singularityhub singularity singularity-containers containers management registry

JavaScript Updated Mar 28, 2019 5 issues need help

glotzerlab / hoomd-blue

21

HOOMD-blue is a general-purpose particle simulation toolkit. It scales from a single CPU core to thousands of GPUs.

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C++ Updated Mar 29, 2019 1 issue needs help

nf-core / ampliseq

21

16S rRNA amplicon sequencing analysis workflow using QIIME2

amplicon-sequencing 16s nf-core nextflow singularity docker

Nextflow Updated Mar 7, 2019 1 issue needs help

gaoxifeng / Robust-Hexahedral-Re-Meshing

19

Hex-mesh simplification and optimization

hexahedral-mesh simplification singularity global-structure

C++ Updated Jun 10, 2018

nextflow-io / nf-hack17-tutorial

17

Nextflow basic tutorial for newbie users

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Nextflow Updated Jun 17, 2018

expfactory / expfactory

17

software to generate a reproducible container with a battery of experiments

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Python Updated Sep 29, 2018

bsc-wdc / compss

17

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distrib…

distributed-computing workflows java python c workflow-management-system pipeline-framework hpc docker singularity slurm

Java Updated Mar 30, 2019

vsoch / forward

15

Sherlock Port Forwarding Utility

sherlock hpc singularity forwarding ssh-forwarding jupyter python notebook ssh

Shell Updated Oct 29, 2018

singularityhub / singularity-cli

13

streamlined singularity python client (spython) for singularity

singularity singularity-python client cli containers

Python Updated Mar 7, 2019

dgruber / wfl

13

A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs

docker processes cloud-foundry k8s workflow hpc macos linux high-throughput singularity

Go Updated Mar 13, 2019

vsoch / scif

13

scientific filesystem: a filesystem organization for scientific software and metadata

singularity docker container scientific-filesystems organization metadata standard containers

Python Updated Mar 28, 2019 1 issue needs help

ArangoGutierrez / Singularity-tutorial

11

Singularity 101

singularity containers hpc tutorial rootless-containers mpi gpu

Forked from Singularity-tutorial/Singularity-tutorial.github.io Updated Mar 29, 2019

NIH-HPC / gpu4singularity

10

Add GPU support to your Singularity container!

singularity gpu-support cuda

Shell Updated Jul 20, 2017

Product-Live / Singularity

9

NodeJS framework for services

singularity framework nodejs javascript

JavaScript Updated Jan 8, 2019

vsoch / singularity-scientific-example

9

example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers

singularity-containers hpc gce google-compute aws ec2 singularity genomics

Forked from cjprybol/singularity-testing Jupyter Notebook Updated Aug 10, 2017

opensciencegrid / cvmfs-singularity-sync

9

Scripts to synchronize Singularity images to a CVMFS repository.

cvmfs singularity

Python Updated Mar 29, 2019

singularityhub / sregistry-cli

8

Singularity Global Client for container management

singularity-container singularity singularity-hub singularity-registry client

Python Updated Mar 27, 2019

vsoch / singularity-shiny

8

a quick shiny server in a Singularity Container. For @griznog!

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Shell Updated Nov 6, 2018

Barsonax / Singularity

6

A extremely fast ioc container for high performance applications

duality ioc ioc-container dependency-injection csharp di inversion-of-control inversionofcontrol ioc-framework singularity dependency-injection-container dotnet

C# Updated Mar 29, 2019

mbhall88 / Singularity_recipes

6

Repository with all my Singularity recipes

singularity-containers singularity-hub singularity nanopore bioinformatics

Updated Feb 21, 2019

sci-f / sci-f.github.io

6

The Scientific Filesystem Specification and Documentation

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CSS Updated Nov 22, 2018

marcc-hpc / pytorch

6

Singularity Container for PyTorch

singularity pytorch

Python Updated Nov 30, 2018

BU-ISCIII / nextflow-scif

5

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) …

docker-container nextflow singularity recipe singularity-containers nextflow-scif nextflow-pipelines docker-image scif-recipe nextflow-workflow

HTML Updated Feb 25, 2019

singularity

Repositories 214