Here are
51 public repositories
matching this topic...
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
Updated
Jun 15, 2021
Jupyter Notebook
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Updated
Apr 22, 2021
HTML
Methods for summarizing and visualizing multi-biosample functional genomic annotations
Updated
Jul 13, 2021
Python
Predicting regulatory DNA elements based on epigenomic signatures
Updated
Jul 17, 2018
Python
Bead single-cell atac processing
Updated
May 26, 2020
Python
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
Updated
Aug 19, 2020
Shell
Python package to analyze DNA methylation data
Updated
Sep 22, 2020
Python
Materials used during #NGSchool2017
Updated
Sep 16, 2017
HTML
Updated
Feb 28, 2020
Python
Tool to estimate purity of tumor samples exploiting DNA Methylation data
Application for semi-automated genomic annotation.
Updated
Jan 28, 2021
Shell
Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
Updated
Feb 3, 2021
Python
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Jointly characterizing epigenetic dynamics across multiple cell types
Toolkit for circRNA prediction by machine learning
epigenome scale metabolic modeling for cancer metabolism
Updated
May 19, 2021
HTML
Find risk snp in the LD region of GWAS snps by convolutional neural network
Updated
Feb 28, 2019
Python
An R/Bioconductor package for detecting chromatin state switches
Updated
Jul 15, 2021
Python
snakemake workflow for random forest based feature selection on chromHMM data
Updated
Mar 23, 2018
Python
Differential Epigenetic Correlation Test
The data preprocessing pipeline for the VISION project (for mouse data)
Updated
Sep 29, 2019
Python
ATAC-seq pipeline written in Nextflow
Updated
Oct 8, 2018
Nextflow
The code of article "Large-scale determination and characterization of cell type-specific regulatory elements in the human genome"
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