DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Simple & Efficient data access for Scala and Scala.js

Analysis of single cell RNA-seq data course

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Intuitive local web frontend for the BLAST bioinformatics tool

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Rapid large-scale prokaryote pan genome analysis

A repository for setting up a RNAseq workflow

Single Nucleus Analysis Pipeline for ATAC-seq

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

De novo assembly from Oxford Nanopore reads.

A tool to circularize genome assemblies

UGENE is free open-source cross-platform bioinformatics software

Polyrhythmic Sequencer library for Web Audio API.

Accurate and flexible loops calling tool for 3D genomic data.

Antimicrobial Resistance Identification By Assembly

Finds SNP sites from a multi-FASTA alignment file

a set of abstractions written for pure data, including sequencers, guis, and other utilties.

BAM Statistics, Feature Counting and Annotation

Protein Identification with Deep Learning

a collection of scripts and notes related to genomics and bioinformatics

xHLA: Fast and accurate HLA typing from short read sequence data

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Generate consensus reads to reduce sequencing noises and remove duplications