Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Python
Updated Sep 21, 2018
The codebase of the OpenMS project
C++
Updated Apr 20, 2019
Various teaching material
HTML
Updated Mar 6, 2019
A collection of Galaxy-related training material
HTML
Updated Apr 18, 2019
A Python API for the RCSB Protein Data Bank (PDB)
Python
Updated Mar 19, 2019
Base Classes and Functions for Mass Spectrometry and Proteomics
R
Updated Apr 16, 2019
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
R
Updated Oct 2, 2018
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
Python
Updated Jan 8, 2019
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
C++
Updated Mar 18, 2019
Feature Annotation Location Description Ontology
XSLT
Updated Dec 13, 2018
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Python
Updated Apr 18, 2019
A complete toolkit for shotgun proteomics data analysis
Interpretation of proteomics identification results
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehe…
Compare different differential abundance and expression methods
R
Updated Mar 15, 2019
Highly adaptable common interface for proteomics search and de novo engines
Open-source java library for computational proteomics
Genomic and Proteomic data exploration and pattern mining
Python
Updated Mar 15, 2019
pyQms, generalized, fast and accurate mass spectrometry data quantification
Python
Updated Jan 9, 2019
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
HTML
Updated Apr 17, 2019
Toolbox for including enzyme constraints on a genome-scale model.
MATLAB
Updated Apr 9, 2019
📚 🔬 PIA - Protein Inference Algorithms
Java
Updated Mar 20, 2019
PDV: an integrative proteomics data viewer
Java
Updated Apr 9, 2019
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Python
Updated Apr 15, 2019
Prize-Collecting Steiner Forests for Interactomes
Jupyter Notebook
Updated Apr 18, 2019
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass sp…
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
Java
Updated Apr 15, 2019
Deep Learning for Peptide Retention Time Prediction
Python
Updated Nov 24, 2018
PHOsphoproteomic dissecTiOn using Networks
Python
Updated Apr 3, 2019
Ultra fast and comprehensive peptide identification in mass spectrometry–based proteomics