Basic info

Application name: prom2teams
Application repo link: https://github.com/idealista/prom2teams
**Application h

This is from stackoverflow:
https://stackoverflow.com/questions/60879706/sympy-solve-linear-system-of-equations

In this example linear_eq_to_matrix takes a long time:

from sympy import *
import sympy as sp
import numpy as np

## I've imported all libs.
comp = 5
h = 0.1
nodes = int(((comp/h)+3))
a = np.array(sp.symbols("w0:"+str(nodes**2)))
w = np.reshape(a, (nodes,nodes)

Checklist

Please ensure the following tasks are completed before filing a bug report.

• Read and understood the [Code of Conduct][code-of-conduct].
• Searched for existing issues and pull requests.

Description

Description of the issue.

The following code produces an array whose shape does not match what I'd expect:

Version of Singularity:

3.0.3

Expected behavior

Some progress or update information during the creation of the SIF file.

Actual behavior

During "Creating SIF file..." step, the console does not produce any visible output for the user - but does create the resulting file eventually.

Steps to reproduce behavior

I was executing a few “larger” builds through the bui

Describe the bug
When the optional file cc_config.xml is absent, the three default log flags (file_xfer, sched_ops, task) remain unset.
If cc_config.xml is present, but no log flags are mentioned in it, the defaults are set.

Steps To Reproduce

1. Delete or rename cc_config.xml
2. Restart client
3. View Event log.

Expected behavior
Default values should be set, as before.

This is just a placeholder issue to obtain feedback about the current state of the docs:

1. Are the docs clear enough?
2. Are the examples useful and real?
3. Is the information there for a newbie?
4. Is the information there for an advanced user?
5. Is the organization appropiate?
6. What can we do to improve it.

Example:
Run this tool (provide any directory as the aa input)

class: CommandLineTool
cwlVersion: v1.0
baseCommand: ["echo"]
inputs:
- type: Directory
  id: aa
  inputBinding:
    valueFrom: "$(self.listing.length)"
outputs:
  o1:
    type: Directory
    outputBinding:
      glob: $(inputs.aa.basename)
requirements:
- class: InlineJavascriptRequirement
- class: InitialWork

Please add data for the model cumulative cases.

This would be useful when trying to manually fit parameters to observed data especially around interventions.

/edit by noleti: Rephrasing as "Please add a line to the results plot which represents the cumulative number of cases in the simulation (i.e. cumulative cases (simulation)). The number would essentially be total population-current susce

Issue tracker is only for Bugs and Features, before to open a new issue please read the Contributing document (link at the right), and use the forums if you need help or technical support.

Dollar signs entered into Builder loop nReps fields are being compiled to JS in the TrialHandler nReps parameter, causing a reference error in browsers, e.g., see Discourse post

Three very minor typos are present in these documents that break the code when copied-and-pasted as they are.

Link: https://gatk.broadinstitute.org/hc/en-us/community/posts/360056484652-Typos-in-docs

--

1.  https://gatk.broadinstitute.org/hc/en-us/articles/360036726571-LeftAlignAndTrimVariants

the fifth code block on this page

Brain.py looked quite interesting but it gives me the following when I tried to run it.
[i] Loading brain mesh
[i] Requesting "brain.obj" from remote server
[w] Data not available on remote server

There are few PR and issue about the example can't run. For example #124

This means our example might be confusing, so add instructions on how to run the example to documentation.

This would make the process for making small corrections easier for non-developers. From a comment on #8349.

This should be pretty easy to do and a good task for a new developer or community member looking to make a small contribution.

Traceback:

# python cli.py markdown_db_migrate
Slave binds are misssing, adding Master as slave too.
<type 'exceptions.KeyError'>
('TWITTER_CONSUMER_KEY',)
'TWITTER_CONSUMER_KEY'
Twitter signin disabled
<type 'exceptions.KeyError'>
('FACEBOOK_APP_ID',)
'FACEBOOK_APP_ID'
Facebook signin disabled
<type 'exceptions.KeyError'>
('GOOGLE_CLIENT_ID',)
'GOOGLE_CLIENT_ID'
Google signin

Currently, the doc builder complains for some files with:

/private-backup/home/obspy/update-docs-pr/src/obspy/misc/docs/source/packages/obspy.core.event.rst:: WARNING: document isn't included in any toctree
/private-backup/home/obspy/update-docs-pr/src/obspy/misc/docs/source/packages/obspy.core.event.header.rst:: WARNING: document isn't included in any toctree
/private-backup/home/obspy/

https://www.arxiv-vanity.com/papers/1401.5761/

AgentProjectile could use the collision exceptions like engulfing on the Emitter to also be able to pass through the emitter, instead of just ignoring it in the contact callback.

The microbe code is not yet in master: Revolutionary-Games/Thrive#1100