MRC Centre for Global Infectious Disease Analysis
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Pinned repositories
Repositories
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global-lmic-reports-orderly
COVID-19 forecast reports for LMICs
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global-lmic-reports-staging
Daily updated LMIC COVID-19 reports (Staging)
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squire
SEIR transmission model of COVID-19. Documentation at:
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global-lmic-reports
Daily updated LMIC COVID-19 reports
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odin.js
Compile odin models to javascript
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COVID19_CFR_submission
Repository for all scripts required to replicate the CFR analysis for paper submission.
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PhyDyn
PhyDyn: Epidemiological modelling in BEAST
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PlasmoMAPI
Mapping Plasmodium Spatial Connectivity from Genetic Data
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covid19-short-term-forecasts
Short term forecasts of COVID-19 deaths in multiple countries
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thecount
Joint Inference Framework for R0 and Epidemic Size
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vivax
Forked from MWhite-InstitutPasteur/Pvivax_IBMIndividual-based model for P. vivax malaria transmission
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squire_js
JS interface for squire
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mint
Malaria Indicators Tool
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mlgts
pf gts launcher
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pika
Lightweight package for estimating the optimal lag and rolling correlation by grouping variable between two time series
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hint
HIV Indicators Tool for district level estimates of HIV epidemic indicators
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vue-prototypes
A place to stick vue component prototypes
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hintr
HIV Indicators Tool R API
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naomi
Naomi model for subnational HIV estimation
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drjacoby
Flexible Markov chain monte carlo via reparameterization
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china-exit-covid-19
Code, data, and supplemental material for the analysis of China's exit from their strict social distancing policy