MRC Centre for Global Infectious Disease Analysis

Repositories

• covid19-forecasts-orderly
  R 6 17 2 0 Updated May 9, 2020

• covid-sim
  5 packages C++ GPL-3.0 138 745 29 4 Updated May 9, 2020

• global-lmic-reports-orderly

  COVID-19 forecast reports for LMICs
  R 3 4 0 0 Updated May 9, 2020

• global-lmic-reports-staging

  Daily updated LMIC COVID-19 reports (Staging)
  HTML 0 1 0 0 Updated May 9, 2020

• hermione
  R 0 1 0 0 Updated May 9, 2020

• squire

  SEIR transmission model of COVID-19. Documentation at:
  R MIT 4 7 4 0 Updated May 8, 2020

• weighter
  R 0 1 0 0 Updated May 8, 2020

• global-lmic-reports

  Daily updated LMIC COVID-19 reports
  HTML 0 2 0 0 Updated May 7, 2020

• sircovid
  C 0 6 11 (1 issue needs help) 0 Updated May 7, 2020

• odin.js

  Compile odin models to javascript
  R 0 3 1 0 Updated May 6, 2020

• COVID19_CFR_submission

  Repository for all scripts required to replicate the CFR analysis for paper submission.
  R MIT 23 56 3 0 Updated May 6, 2020

• PhyDyn

  PhyDyn: Epidemiological modelling in BEAST
  Java GPL-3.0 7 13 2 0 Updated May 6, 2020

• PlasmoMAPI

  Mapping Plasmodium Spatial Connectivity from Genetic Data
  C++ MIT 0 4 0 1 Updated May 5, 2020

• covid19-short-term-forecasts

  Short term forecasts of COVID-19 deaths in multiple countries
  HTML 2 1 0 1 Updated May 5, 2020

• thecount

  Joint Inference Framework for R0 and Epidemic Size
  0 1 0 0 Updated May 5, 2020

• vivax

  Forked from MWhite-InstitutPasteur/Pvivax_IBM

  Individual-based model for P. vivax malaria transmission
  C++ MIT 2 2 2 (1 issue needs help) 1 Updated May 4, 2020

• squire_js

  JS interface for squire
  JavaScript MIT 0 1 0 0 Updated May 4, 2020

• mint

  Malaria Indicators Tool
  TypeScript MIT 0 1 0 4 Updated May 4, 2020

• mlgts

  pf gts launcher
  R 0 1 0 0 Updated May 4, 2020

• pika

  Lightweight package for estimating the optimal lag and rolling correlation by grouping variable between two time series
  R 0 1 5 0 Updated May 3, 2020

• korea-exit-covid-19
  R 0 2 0 0 Updated May 2, 2020

• mintr
  R 0 0 0 0 Updated Apr 29, 2020

• hint

  HIV Indicators Tool for district level estimates of HIV epidemic indicators
  TypeScript 0 1 0 0 Updated Apr 23, 2020

• odin

  ᚩ A DSL for describing and solving differential equations in R

  infrastructure
  R 3 43 57 1 Updated Apr 22, 2020

• vue-prototypes

  A place to stick vue component prototypes
  Vue 0 1 0 0 Updated Apr 21, 2020

• hintr

  HIV Indicators Tool R API
  R 1 2 0 1 Updated Apr 21, 2020

• naomi

  Naomi model for subnational HIV estimation
  R 1 2 2 0 Updated Apr 20, 2020

• drjacoby

  Flexible Markov chain monte carlo via reparameterization
  R MIT 2 7 14 0 Updated Apr 17, 2020

• plot_facebook_mobility_data
  R 0 1 0 0 Updated Apr 15, 2020

• china-exit-covid-19

  Code, data, and supplemental material for the analysis of China's exit from their strict social distancing policy
  R CC0-1.0 1 1 0 0 Updated Apr 14, 2020