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epidemiology

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ngiangre
ngiangre commented Apr 26, 2020

⚠️ IMPORTANT: Please fill out this template to give us as much information as possible to consider/implement this update.

Summary

I've been taking a course called 'Fairness and Ethics in Digital Health' at columbia and it has made me more conscious of this subject.

I reached out to the ReCODE.Health at UCSD to help me in my cour

cls3415
cls3415 commented Mar 24, 2020

This is a great tool!! Kudos!!
This more like a question not an issue.
I was looking for the build_admissions_df sub function and have a question.
So, it looks like, e.g. hospitalization number, was based on "disposition".
And the "disposition" was calculated from "i_hospitalized_v + r_hospitalized_v" in parameter.py.
May I know why the number of hospitalization = (ihosp_ratemarket_share

sgoodreau
sgoodreau commented Aug 23, 2018

Right now plot gives you the age (so exhibits boundary conditions at the start of the simulation) while print givens you final duration (so exhibits boundary conditions at the end of the simulation). This is more confusing than it needs to be.

@smjenness has proposed simply removing the plot. @martinamorris and I favor finding a way to preserve them but make them a bit more useful and clear.

RFMoore
RFMoore commented Aug 15, 2019

Describe the bug
All "Add a Volunteer" data fields are mandatory. All fields should not be a requirement (in current design, particularly geographic information).

Some data fields (right now), such as administrative boundaries are very difficult to remember as text fields (e.g. regions, districts, village). Implies that when trying to rapidly add a volunteer, I am adding bogus informati

Python-for-Epidemiologists
zEpid
pzivich
pzivich commented Oct 11, 2019

Often super-learner implementations include an arithmetic mean estimator. However, AFAIK sklearn doesn't have this implementation (no substantive reason they would include this).

I have an implementation I wrote that adheres to the sklearn format and is compatible with supylearner. So I will add this in the library for ease

aspina7
aspina7 commented Apr 22, 2020

so theres a lot of different variables that need to be called from different datasets for these functions.

And if you get one wrong the warning just gives the generic replacement zero but should be x long.

Maybe we should add in a check to the beginning of the function that makes sure those variable names exist in the appropriate datasets and if not chuck a warning saying this variable doe

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