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Rigbox
A MATLAB toolbox for running behavioral neuroscience experiments and managing data
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alyx
Database for experimental neuroscience laboratories
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phylib
Lightweight electrophysiological data analysis library
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allenCCF
Tools to work with Allen Inst CCF data in matlab
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matlab-ci
Automation server for MATLAB continuous integration, written in Node.js
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alyx-matlab
Some MATLAB functions for easier interfacing with an Alyx database
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expDefinitions
experiment definition files (primarily Signals)
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phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
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mpep
mPEP runs experiments where stimuli and timings can be decided in advance (i.e. not in the context of behavior)
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spikes
cortex lab code for electrophysiology
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npytools
[WIP] Command-line utilities to deal with NPY array files
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Lilrig
code specific to Lilrig
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mmmGUI
"mouse movie manager" and GUI
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Suite2P
Tools for processing 2P recordings
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KiloSort
GPU code for spike sorting
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archiving
Scripts and miscellaneous tools for dealing with archiving and restoring data to/from tape
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groundTruth
first commit
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openNeuroData
A proposal for data standardization in neurophysiology
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psychofit
A module for fitting 2AFC psychometric data
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widefield
Image processing and tools for widefield imaging
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kilotrodeRig
code specific to the kilotrode rig
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Transcriptomics
MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools
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alf2neuroscope
Converts ALF format to be read in neuroscope
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neuropixels
Information about Neuropixels electrode arrays
