COMBINE lab

Popular repositories

1. salmon Public

   🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

   C++ 487 126

2. pufferfish Public

   An efficient index for the colored, compacted, de Bruijn graph

   C++ 84 17

3. RapMap Public

   Rapid sensitive and accurate read mapping via quasi-mapping

   C++ 82 24

4. terminus Public

   Rust 41 3

5. wasabi Public

   Prepare Sailfish and Salmon output for downstream analysis

   R 39 7

6. alevin-fry Public

   🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

   Rust 36 3