Here are
288 public repositories
matching this topic...
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Updated
Jul 11, 2020
Python
The codebase of the OpenMS project
Various teaching material
Updated
Feb 12, 2020
HTML
A collection of Galaxy-related training material
Updated
Jul 29, 2020
HTML
A Python API for the RCSB Protein Data Bank (PDB)
Updated
Jun 9, 2020
Python
Base Classes and Functions for Mass Spectrometry and Proteomics
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
A complete toolkit for shotgun proteomics data analysis
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Updated
Jul 30, 2020
Java
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
Updated
Apr 29, 2020
Python
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Updated
May 15, 2020
Python
Feature Annotation Location Description Ontology
Updated
Jan 21, 2020
XSLT
Compare different differential abundance and expression methods
Prize-Collecting Steiner Forests for Interactomes
Updated
May 31, 2019
Jupyter Notebook
Interpretation of proteomics identification results
Updated
Jul 25, 2020
Java
Deep (Transfer) Learning for Peptide Retention Time Prediction
Updated
Jun 8, 2020
Python
Ultra fast and comprehensive peptide identification in mass spectrometry–based proteomics
Updated
Jul 30, 2020
HTML
Toolbox for including enzyme constraints on a genome-scale model.
Updated
Jul 27, 2020
MATLAB
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Updated
Jun 19, 2020
HTML
PDV: an integrative proteomics data viewer
Updated
Apr 21, 2020
Java
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Highly adaptable common interface for proteomics search and de novo engines
Open source Java library for computational proteomics
Updated
Jul 25, 2020
Java
The Sample to Data file format for Proteomics
Updated
Jul 28, 2020
Python
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Updated
Jul 15, 2020
Python
Genomic and Proteomic data exploration and pattern mining
Updated
Jul 20, 2020
Scheme
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Updated
Aug 22, 2019
Python
📚 🔬 PIA - Protein Inference Algorithms
Updated
Jul 23, 2020
Java
pyQms, generalized, fast and accurate mass spectrometry data quantification
Updated
Jul 16, 2020
Python
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