The deepTools ecosystem

Tools to process and analyze deep sequencing data.

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

A python extension for quick access to bigWig and bigBed files

A python library for constructing interval trees with associated exon/annotation information

C++ implementation of hicBuildMatrix

python module to plot beautiful and highly customizable genome browser tracks

Galaxy Docker Image for the HiCExplorer

Simple web browser to visualize HiC tracks

A python library for accessing 2bit files

Docker container for easy deployment of the HiCBrowser