Galaxy Project

Repositories

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 634 740 1,259 (130 issues need help) 154 Updated Jun 21, 2020

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 57 97 5 7 Updated Jun 20, 2020

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 367 145 80 30 Updated Jun 20, 2020

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  HTML 147 37 47 (1 issue needs help) 3 Updated Jun 20, 2020

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy toolshed wrappers iuc
  HTML MIT 250 75 173 (6 issues need help) 105 Updated Jun 20, 2020

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 35 35 27 0 Updated Jun 19, 2020

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 17 5 6 7 Updated Jun 19, 2020

• GTN-community-paper-2020
  TeX 1 0 0 0 Updated Jun 19, 2020

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman
  Python 20 30 3 0 Updated Jun 19, 2020

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 103 (1 issue needs help) 2 Updated Jun 18, 2020

• it-higlass-docker

  Dockerfile for the Galaxy Interactive Tool for HiGlass
  Shell MIT 0 0 0 0 Updated Jun 18, 2020

• ephemeris

  Library for managing Galaxy plugins - tools, index data, and workflows.
  Python 25 16 17 (2 issues need help) 4 Updated Jun 18, 2020

• cloudlaunch-registry

  An application registry for CloudLaunch
  1 0 0 0 Updated Jun 17, 2020

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  TSQL MIT 24 17 9 1 Updated Jun 17, 2020

• planemo

  Command-line utilities to assist in developing tools for the Galaxy Project.

  usegalaxy
  Python 61 55 213 (14 issues need help) 9 Updated Jun 14, 2020

• ansible-pulsar

  An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
  6 4 1 3 Updated Jun 12, 2020

• cloudlaunch-ui

  A user interface for the cloudlaunch app

  cloud angular5
  TypeScript MIT 9 5 8 0 Updated Jun 10, 2020

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  Python MIT 10 4 5 6 Updated Jun 10, 2020

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 80 34 77 14 Updated Jun 10, 2020

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 33 28 52 (5 issues need help) 4 Updated Jun 2, 2020

• blend4php

  A PHP API for interacting with Galaxy
  PHP LGPL-3.0 3 5 10 0 Updated Jun 2, 2020

• ansible-slurm

  Ansible role for installing and managing the Slurm Workload Manager
  13 8 3 3 Updated May 22, 2020

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  MIT 0 0 0 0 Updated May 20, 2020

• toolshed

  WIP of The Galaxy Toolshed split from the Galaxy codebase
  Python 3 0 0 2 Updated May 20, 2020

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  Python 53 39 5 0 Updated May 15, 2020

• blend4j

  blend4j is a JVM partial reimplementation of the Python library bioblend for interacting with Galaxy, CloudMan, and BioCloudCentral.
  Java EPL-1.0 22 14 12 0 Updated May 14, 2020

• ansible-proftpd

  Ansible role for installing and configuring ProFTPD for Galaxy
  4 5 2 0 Updated May 13, 2020

• bioblend

  A Python library for interacting with Galaxy and CloudMan API

  api api-client usegalaxy cloudman
  Python MIT 86 64 35 4 Updated May 13, 2020

• galaxy-test-data

  Test data files used by Galaxy.
  HTML 7 1 0 1 Updated May 10, 2020

• nosehtml

  HTML Output plugin for Nose / Nosetests
  Python 2 0 0 0 Updated May 6, 2020