In the documentation here: https://github.com/bgruening/docker-galaxy-stable#extending-the-docker-image--toc

It mentions RUN install-tools $GALAXY_ROOT/my_tool_list.yml with no reference to where install-tools comes from or how to use it.

In numpy, if I want a random array uniformly distributed between -0.6 and +0.6 with 100 elements, I'd write:

rng = numpy.random.RandomState(seed)
array = rng.uniform(-0.6, 0.6, 100)

Using GalSim deviates, I'd do something like:

ud = galsim.UniformDeviate(seed)
array = np.empty(100)
ud.generate(array)
array = array*1.2 - 0.6

I find the former easier to read. I d

Sentry Issue: HB-GALAXY-VY

OSError: [WinError 123] The filename, directory name, or volume label syntax is incorrect: 'C:\\WINDOWS\\iun504.exe C:\\Program Files (x86)\\Blades of Avernum'

local\winappfinder.py in _find_executable at line 70
        location = uk.install_location_path \

wrapper for RNAz needs fixing

• Score [which] strand should be param type select:
  • forward
  • reverse
  • both
• use (di/mono)nucleotide shuffled z-scores should be select.
• mononucleotide shuffled z-scores may also be broken in source...not sure yet. When used on my set (~100) of (diverse) sequence al

Its clear that some of the conventions I've adopted for code and testing are unclear. For example:

• What is the different between an unmasked image, a 1D image and 2D image?

• Why does a tracer have images called blurred_profile_image_plane_images? How do these different from normal images? Model images?

• What does a 5x5 fixture mean?

Basically, the abstractions are good, but it need

There could be new starting positions for realms. Ancient could start in middle of the galaxy and rest of the realms from outside of the galaxy.

in https://github.com/ARTbio/ansible-artimed/blob/master/docs/installing%20tools%20and%20workflows.md#installing-tools

the command to run to ultimately install tools and workflows is not indicated