contamination

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

mtDNA Variant Caller

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Conta is an R package to detect cross contamination and source of contamination

Analytical solutions for groundwater contaminant transport

Rapid and simple taxonomic profiling of genome and metagenome contigs

Repositorio para análisis y publicación de datos de contaminación en Andalucía

Module and script to remove contamination in assembled genomes before submission to ncbi

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x

Nextflow pipeline for Conpair (concordance and contamination estimator)

Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

Tumour-in-Normal Contamination package

Conta is an R package to detect cross contamination and source of contamination

autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

Contamination detection workflow based on mtDNA

This repo has information about some ecological issues, because I consider it important to become aware of our future on this planet.

Escape if you can! A radiological event has occurred and you have to find your way out. Pick up items along the way that may help or harm you. When you've accumulate too much radiation it's game over.

Python based machine-learning scripts that generate real-time predictions of the water quality on the shores of the larger Montreal island for the water activities aficionados The predictions are displayed online interactively on an OpenShift server built with the LAMP stack.

Analytical solution for Contaminant Transport in Groundwater

Module simulating groundwater flow and contaminant transport in multiple groundwater zones (saturated and unsaturated)

Parameter estimation of seeding and contamination rates on a triangular lattice using the method of simulated moments (MSM).