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bayesian-inference

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dmyersturnbull
dmyersturnbull commented May 1, 2020

This is an awesome library, thanks @ddbourgin!!

Users might not know the best way to install this package and try it out. (I didn't, so I eventually just copied the source files.)
Neither the readme nor readthedocs have install instructions.

I couldn't find it on PyPi or Anaconda, and there doesn't appear to be a pyproject.toml, setup.cfg, setup.py, or conda recipe.

Moreover, the t

Tuxonomics
Tuxonomics commented Oct 18, 2018

Summary:

Regarding the parameters of the dual averaging optimization for the stepsize in the warmup, all parameters can be set by the user except mu. For certain models, the initial choice of mu can result in a drastic drop of the stepsize for subsequent iterations. This might lead to extra computation time. As mu is adjusted for each window of the mass matrix adjustment, this can in e

SyDudulu
SyDudulu commented Dec 11, 2019

There seems to be some little bugs in these examples. For example
for t in range(iters): labeled_indices = (np.random.randint(0, n_labeled, size=batch_size)) x_labeled_batch = x_labeled[labeled_indices]

It throws the error that
TypeError: Only integers, slices (:), ellipsis (...), tf.newaxis (None`) and scalar tf.int32/tf.int64 tensors are valid indices, got array([17,

bob-carpenter
bob-carpenter commented Oct 3, 2019

Summary:

Right now there is a wiki page:

https://github.com/stan-dev/rstan/wiki/RStan-Mojave-Mac-OS-X-Prerequisite-Installation-Instructions

about a particular aspect of Mac OS X installation. Can we roll that into the basic install instructions?

https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started

Otherwise, I fear people won't find it. Right now, there's a bunch of

causalnex
ogencoglu
ogencoglu commented Mar 11, 2020

Description

Following the tutorial raises the following:

bn = bn.fit_cpds(train, method="BayesianEstimator", bayes_prior="K2")

Would be great to have a fully working jupyter notebook as an example.

Steps to Reproduce

/usr/local/lib/python3.7/site-packages/causalnex/network/network.py in fit_cpds(self, data, method, bayes_prior, equivalent_sample_size)
    344 
    345  
bug
mathematicalmichael
mathematicalmichael commented May 6, 2019

the links in the README pull up HTML pages that seem to be missing images for the models.

Perhaps I could convert them to markdown/latex cells so they'll guarantee rendering?

Love this repo, by the way. Writing a software library (and demos for it) based on my thesis work in inverse problems, and this helps motivate what "good tutorials" can look like.

jgabry
jgabry commented Oct 4, 2019

@bgoodri I just noticed that none of the CRAN versions of the vignettes have any output from the code chunk no output anymore (e.g. if you look at https://cran.r-project.org/web/packages/rstanarm/vignettes/count.html
or any of the other vignettes). That is, it looks like none of the code is getting evaluated. I know that we're using that mechanism with params$EVAL to avoid evaluating the vignet

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