Fluorescence Tools

Repositories

• PAM

  This is a mirror of the PAM repository hosted on GitLab. Please refer to the GitLab repository for active development.
  MATLAB GPL-3.0 0 2 1 0 Updated Jun 8, 2020

• tttrlib

  File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data

  python ptu flim becker picoquant
  C++ MPL-2.0 0 6 1 0 Updated Jun 8, 2020

• chisurf

  Global analysis platform for fluorescence data

  correlation protein fluorescence spectroscopy multiple-datasets fluorescence-data global-analysis
  Python GPL-2.0 0 5 9 (1 issue needs help) 0 Updated Apr 20, 2020

• quest

  QuEst - Quenching Estimator for fluorophores coupled to proteins

  simulation fluorescence fret quenching dyes
  Jupyter Notebook MIT 0 0 0 0 Updated Mar 22, 2020

• conda-recipes

  Recipes for Anaconda

  recipes anaconda conda fluorescence
  Shell CC-BY-SA-4.0 0 0 1 0 Updated Mar 8, 2020

• FRETrest

  Helper scripts for FRET-restrained MD simulations. Generate AMBER restraint files (DISANG).
  Python GPL-3.0 0 0 0 0 Updated Mar 5, 2020

• exchange-formats
  Python 0 1 0 0 Updated Nov 27, 2019

• LabelLib

  Library for coarse-grained simulations of probes flexibly coupled to biomolecules.

  pymol fluorescence simulation-toolkit fret science-research accessible-volumes
  C++ MPL-2.0 3 5 4 1 Updated Oct 31, 2019

• avtraj

  fps simulation fluorescence avs accessible-volumes md-trajectory
  Python LGPL-2.1 0 0 1 (1 issue needs help) 0 Updated Oct 14, 2019

• Fluorescence-Tools.github.io
  CSS MIT 1 1 0 0 Updated Sep 2, 2019

• FPS

  Fluorescence positioning system

  fps simulation structure fluorescence fret fret-positioning restraints
  C# LGPL-2.1 0 0 2 0 Updated Jul 29, 2019

• MultipleTauPyCorr

  library correlation fluorescence fcs
  Python 0 0 0 0 Updated Jul 27, 2019

• mapack

  Forked from lutzroeder/mapack

  Linear algebra library for .NET
  C# 15 0 0 0 Updated Jul 25, 2019

• FRETlines
  Jupyter Notebook MIT 0 3 0 0 Updated Jun 4, 2019

• mdtraj_fps

  mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories

  single-molecule fluorescence spectroscopy
  Python LGPL-2.1 1 1 0 0 Updated Mar 14, 2018