Repositories
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spinalcordtoolbox
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
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axondeepseg
Axon/Myelin segmentation using Deep Learning
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idea-siemens
Repository about the installation, management and use of the IDEA Siemens pulse sequence programming station.
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data-management
Repo that deals with datalad aspects for internal use
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changelog
Create a changelog file from all the merged pull requests
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gifmaker
Convert images to GIF animation.
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bids-specification
Forked from bids-standard/bids-specificationBrain Imaging Data Structure (BIDS) Specification
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distriploy
Release & deployment helper
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lesion-mapping
Set of tools for mapping lesions in the brain and/or spinal cord
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mp2rage
Function which computes T1 from mp2rage
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vertebral-labeling-deep-learning
Deep Learning method for intervertebral disc detection and labeling (WIP)
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bids_neuropoly
Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)
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t2star-mapping
Collection of scripts to fit T2* MRI data
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atlas-rat
Scripts to generate a microstructure atlas of the rat spinal cord
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multiclass-segmentation
Repository for the code related to the NIH marmoset longitudinal segmentation project.
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axonseg
Segment axon and myelin from microscopy data. Written in Matlab.
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domainadaptation
Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".
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deep-active-learning
Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)
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template
A framework for creating unbiased MRI templates of the spinal cord
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sct_testing_management
Web based management system of the testing files
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surface_based_tools
Tools related to Freesurfer pipeline
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gmseg
Spinal cord gray matter segmentation using deep dilated convolutions.
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partial_volume_correction
This repository moved to the following address:
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agilent_7t
Various matlab code to manage data from Agilent 7T scanner at MHI
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sct_matlab
Matlab code for SCT