NeuroPoly

Repositories

• spinalcordtoolbox

  Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

  python mri neuroimage spinalcord
  Python LGPL-3.0 73 121 331 (28 issues need help) 19 Updated May 5, 2021

• axondeepseg

  Axon/Myelin segmentation using Deep Learning

  machine-learning deep-learning segmentation convolutional-neural-networks electron-microscopy axon microscopy
  Python MIT 21 92 154 (9 issues need help) 13 Updated May 2, 2021

• idea-siemens

  Repository about the installation, management and use of the IDEA Siemens pulse sequence programming station.
  MIT 0 0 0 0 Updated Apr 30, 2021

• data-management

  Repo that deals with datalad aspects for internal use
  0 1 40 0 Updated Apr 25, 2021

• changelog

  Create a changelog file from all the merged pull requests
  Python MIT 1 1 5 (1 issue needs help) 3 Updated Apr 7, 2021

• gifmaker

  Convert images to GIF animation.
  Python MIT 1 5 1 0 Updated Apr 6, 2021

• InferSent-model1
  0 0 0 0 Updated Apr 5, 2021

• bids-specification

  Forked from bids-standard/bids-specification

  Brain Imaging Data Structure (BIDS) Specification
  Python CC-BY-4.0 99 0 0 0 Updated Mar 9, 2021

• distriploy

  Release & deployment helper
  Python MIT 0 1 5 1 Updated Mar 4, 2021

• tract-clustering

  Data-driven approach for tracts in rat histology

  clustering rat atlas
  Jupyter Notebook 0 0 3 0 Updated Oct 21, 2020

• lesion-mapping

  Set of tools for mapping lesions in the brain and/or spinal cord
  Python 0 0 3 1 Updated Aug 11, 2020

• mp2rage

  Function which computes T1 from mp2rage
  Python 1 4 1 0 Updated Aug 8, 2020

• InferSent

  Forked from facebookresearch/InferSent

  InferSent sentence embeddings
  Jupyter Notebook 454 0 0 0 Updated Jul 4, 2020

• vertebral-labeling-deep-learning

  Deep Learning method for intervertebral disc detection and labeling (WIP)
  Python BSD-3-Clause 3 6 0 0 Updated May 27, 2020

• bids_neuropoly

  Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)
  Python 0 1 3 0 Updated May 21, 2020

• medicaltorch

  Forked from perone/medicaltorch

  A medical imaging framework for Pytorch
  Python Apache-2.0 112 0 0 0 Updated Apr 14, 2020

• sct_docker

  Docker distribution of Spinal Cord Toolbox

  docker-image neuroimaging testing-tool
  Python 3 1 12 1 Updated Mar 18, 2020

• t2star-mapping

  Collection of scripts to fit T2* MRI data
  MATLAB MIT 3 3 0 0 Updated Jan 29, 2020

• atlas-rat

  Scripts to generate a microstructure atlas of the rat spinal cord
  MATLAB 1 0 2 0 Updated Nov 7, 2019

• multiclass-segmentation

  Repository for the code related to the NIH marmoset longitudinal segmentation project.
  Python 7 14 0 0 Updated Oct 25, 2019

• axonseg

  Segment axon and myelin from microscopy data. Written in Matlab.
  MATLAB MIT 10 14 5 0 Updated Jun 12, 2019

• domainadaptation

  Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

  deep-learning mri medical-imaging domain-adaptation
  Python Apache-2.0 7 28 3 0 Updated Mar 8, 2019

• deep-active-learning

  Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)
  Jupyter Notebook MIT 8 29 10 0 Updated Jan 18, 2019

• template

  A framework for creating unbiased MRI templates of the spinal cord
  Python MIT 1 3 2 0 Updated Nov 29, 2018

• sct_testing_management

  Web based management system of the testing files
  Python MIT 1 0 26 4 Updated Sep 25, 2018

• surface_based_tools

  Tools related to Freesurfer pipeline
  MATLAB MIT 1 4 0 1 Updated Feb 21, 2018

• gmseg

  Spinal cord gray matter segmentation using deep dilated convolutions.

  machine-learning research deep-learning segmentation spinal-cord
  Jupyter Notebook MIT 6 39 0 0 Updated Feb 13, 2018

• partial_volume_correction

  This repository moved to the following address:
  4 1 0 0 Updated Feb 9, 2018

• agilent_7t

  Various matlab code to manage data from Agilent 7T scanner at MHI
  MATLAB 1 3 1 0 Updated Dec 12, 2017

• sct_matlab

  Matlab code for SCT
  MATLAB 3 1 0 0 Updated Dec 12, 2017