Ontology for the description of human clinical features
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Mar 9, 2022 - Makefile
#
phenotype
Here are 45 public repositories matching this topic...
An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
nlp
docker
natural-language-processing
mongodb
solr
luigi
phenotype
phenotypes
clinical-research
clinical-quality-language
nlpql
clinical-phenotyping
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Mar 8, 2022 - Jupyter Notebook
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
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Jul 27, 2021
Explore the Plant Trait Ontology on the Planteome site.
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Mar 9, 2022 - Python
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Aug 7, 2019 - Python
Python library for extracting HPO encoded phenotypes from text
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Updated
Nov 11, 2021 - Python
Standard terms for annotating mammalian phenotypic data
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Updated
Mar 10, 2022 - Makefile
An Open Source Web Application for Genetic Data (SNPs) Data Crawling
snps
genome
genetic-algorithm
dbsnp
phenotype
snpedia
clinvar
omni
23andme
genetic-data
ancestrydna
data-crawling
rsid
genetic-tests
os-genome
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Feb 13, 2022 - JavaScript
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
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Mar 9, 2022 - Shell
XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.
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Mar 5, 2022 - Makefile
Mapping complex genotypes to phenotypic subclusters
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Jan 31, 2018 - Python
Bayesian ontology querying from Bauer et al.
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Updated
Nov 21, 2018 - Java
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
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Jan 25, 2022 - R
The home of the Drosophila phenotype ontology
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Mar 9, 2022 - Makefile
A command line utility for operating over Phenotype eXchange Format (PXF) files.
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Sep 25, 2018 - Scala
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
semantics
semantic-web
ontology
phenotyping
similarity-measures
phenotype
ontologies
phenotypes
phenomics
phenotype-ontologies
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Oct 4, 2017
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Feb 8, 2022 - Shell
Method to predict phenotypes from functions
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Jan 29, 2018 - Groovy
Complex Phenotypes Team at the NCBI Hackathon
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Aug 16, 2017 - HTML
ontology
phenotyping
phenotype
phenotypes
hpo
zebrafish
phenomics
phenotype-ontologies
zebrafish-phenotypes
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Mar 13, 2018 - Java
Use MAP to explore EHR data for individual patients.
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Dec 13, 2019 - R
python
image
image-processing
plants
plant
root
image-classification
phenotyping
phenotype
image-segmentation
gt
phenotype-prediction
rootnav
rootnav2
rsml
annotataion
root-phenotyping
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Jun 13, 2020 - Python
Computational tool for prioritizing the genetic candidates based on the protein functional and regulatory features
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Dec 9, 2020 - Python
Trim, extract, and convert GEMs
csv
enzyme
extract
gml
trim
dot
phenotype
filtering
graphml
sbml
metabolic-network
genome-scale-models
subnetwork
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Jun 8, 2021 - Python
Code to generate ontology annotated objects (e.g. HPO annotated patients)
simulation
phenotyping
phenotype
phenotypes
hpo
patients
hpo-annotated-patients
phenotype-ontologies
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Nov 29, 2018 - Java
Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.
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Apr 17, 2018 - PostScript
A blog summarizing the outcomes of NSF ABI 1356381.
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Nov 29, 2018 - TeX
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