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GridFree: A pixel-level label tools to segment high-throughput images

Implement Python version >= 3.6.5

MacOS

install
  • execute python3 -m pip install -r requirements.txt to install required packages
run the software
  • execute ./run on a terminal to run the software

Linux OS

install
  • execute python3 -m pip install -r requirements.txt to install required packages
run the software
  • execute ./run on a terminal to run the software

Windows OS

install
  • run cmd go to the path you downloaded GridFree, you can execute cd space your download path
  • execute python -m pip install -r requirements.txt to install required packages
  • execute python -m pip install opencv-python for opencv package
  • execute python -m pip install scikit-image for package installation
  • execute python -m pip install sklearn for package installation
  • screenshot
  • YouTube: https://youtu.be/fSgH1-35Hyw
run the software
  • execute python tkinterGUI_nw.py to run the software

If crashed

Modify matplotlibrc file ADD: backend: TkAgg

Wheat segment demo

screenshot

YouTube: https://youtu.be/IxMBTT4fzr4

Chickpea segment demo

screenshot

YouTube: https://youtu.be/be12xOfF614

Corns segment demo

screenshot

YouTube: https://youtu.be/1ngHQsUFWH4

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