RabadanLab

Repositories

• arcasHLA

  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  Python GPL-3.0 12 40 6 1 Updated Sep 28, 2020

• PH_recombination_virus

  Pipeline to infer recombination rates
  R 0 0 0 0 Updated Sep 8, 2020

• Bootstrap-Analysis-Arriaga-Nature-Cancer-2020

  Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
  R 0 0 0 0 Updated Aug 13, 2020

• TOBI

  TOBI predicts somatic variants from .vcf or .bam input
  R MIT 3 6 3 0 Updated May 29, 2019

• mutcomfocal
  R MIT 0 0 0 0 Updated May 29, 2019

• dockersavi

  Dockerfolder for Docker-ized version of SAVI
  Dockerfile 1 0 0 0 Updated Feb 11, 2019

• randomly

  A Library for Denoising Single-Cell Data with Random Matrix Theory

  sparsity dropout data-analysis single-cell denoising single-cell-rna-seq random-matrix-theory
  Jupyter Notebook MIT 5 19 2 0 Updated Nov 5, 2018

• pamler
  Shell 1 2 0 0 Updated Sep 10, 2018

• randomlyView
  HTML 0 0 0 0 Updated Jun 20, 2018

• mage-pipeline

  MAGE - Multilevel Analysis of Gene Expression
  R MIT 0 1 0 0 Updated Jan 6, 2018

• scTDA

  Forked from CamaraLab/scTDA

  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  Python GPL-3.0 21 6 0 0 Updated Aug 10, 2017

• MITKats

  The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.
  C++ 1 1 0 0 Updated May 18, 2017

• NORI

  NORI (Non-coding RNA Identification), a computational tool to identify lncRNAs using next generation sequencing.
  1 0 0 0 Updated Mar 15, 2017

• sakmapper

  Forked from szairis/sakmapper

  Implementation of Mapper Algorithm
  Python MIT 10 2 0 0 Updated Nov 18, 2016

• EvoMod

  Evolutionary Moduli space visualization and statistics
  Python GPL-3.0 1 0 0 0 Updated Oct 27, 2016

• TARGet

  Forked from CamaraLab/TARGet

  Topological inference of horizontal evolution from multiple sequence alignments
  C++ GPL-3.0 5 0 0 0 Updated Apr 22, 2016

• Pegasus

  Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
  Java MIT 5 7 3 0 Updated Feb 20, 2016

• ph_datasets

  Persistent Homology Datasets
  2 5 0 0 Updated Nov 3, 2015

• melamed_comorbidity

  Code for "Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes". View more information in the ipython notebook
  Python 4 1 0 1 Updated May 26, 2015

• TOBI_fork

  Forked from alireza202/TOBI

  Tumor Only Boosting Identification of driver mutations.
  R 3 0 0 0 Updated Jan 9, 2015