phenotyping

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Here are 62 public repositories matching this topic...

obophenotype / human-phenotype-ontology

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Ontology for the description of human clinical features

semantic-web owl ontology obo phenotyping phenotype ontologies hpo obofoundry

Updated Jul 21, 2021
Makefile

robail-yasrab / RootNav-2.0

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Plant Phenotyping APP

python machine-learning deep-learning artificial-intelligence plant phenotyping plant-growth plant-monitoring plant-phenotypes plant-phenotyping rootnav rootnav2 root-phenotyping

Updated Jun 8, 2021
Python

drseb / HPO-translations

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Internationalisation of the HPO content

language translation semantic-web ontology phenotyping phenotypes hpo hpo-translations phenomics phenotype-ontologies obofoundry

Updated May 25, 2020

thsant / 3dmcap

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3-Demeter Capture is a tool for building 3-D point clouds from images

computer-vision point-cloud phenotyping 3-dimension

Updated Dec 26, 2018
Python

Computational-Plant-Science / DIRT

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Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

image-processing root phenotyping imaging computer-vis phenotyping-algorithms

Updated Jul 29, 2021
Python

PecanProject / bety

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Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)

ruby database agriculture trait postgis plants phenotyping ecosystem-models pecan crops

Updated Jul 12, 2021
Ruby

mgijax / mammalian-phenotype-ontology

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Standard terms for annotating mammalian phenotypic data

json owl ontology obo phenotyping phenotype mammals obofoundry

Updated Jul 26, 2021
Makefile

openalea / eartrack

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An imaging library to detect and track future position of ears on maize plants

python image-processing phenotyping openalea maize

Updated Mar 4, 2019
Jupyter Notebook

Scan-o-Matic / scanomatic

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Scanomatic

python science flask bioinformatics biology image-processing phenotyping

Updated May 27, 2019
Python

mocherson / portableNLP

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developing a portable NLP-based phenotyping system

nlp phenotyping

Updated Apr 29, 2019
Python

drseb / HPO-archive

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HPO archive of the ontology and annotations

annotations ontology archive phenotyping phenotypes hpo hpo-archive phenomics phenotype-ontologies

Updated Mar 9, 2017

openalea-incubator / rhizoscan

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Rhizoscan

rsa root phenotyping openalea

Updated Jul 3, 2019
Jupyter Notebook

aafshar / COPA

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Code accompanying our CIKM paper: "copa: constrained parafac2 for sparse & large datasets"

matlab healthcare tensor-factorization phenotyping tensor tensor-decomposition parafac2

Updated Aug 21, 2018
MATLAB

drseb / boqa

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Bayesian ontology querying from Bauer et al.

similarity phenotyping phenotype bayesian-inference phenotypes hpo phenotype-ontologies obofoundry

Updated Nov 21, 2018
Java

Honghan / KGPhenotyping

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knowledge graph based phenotyping

reusable phenotyping health-data

Updated Jun 7, 2021
Java

UTokyo-FieldPhenomics-Lab / EasyDCP

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A python package for agricultural phenotypic trait extraction from 2D image sets via 3D reconstruction and analysis of 3D point clouds.

phenotyping

Updated Jun 16, 2021
Python

aafshar / TASTE

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Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"

healthcare phenotyping tensor predictive-modeling unsupervised-learning electronic-health-record ehr-phenotyping

Updated Apr 22, 2020
MATLAB

Computational-Plant-Science / 3D_model_reconstruction_demo

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Implementation of the Visual Structure from Motion algorithm optimized for plant branching structures.

root phenotyping phenotyping-algorithms

Updated Jul 14, 2021
C

Computational-Plant-Science / plantit

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Plant science workflow automation in the browser.

hpc phenotyping cluster-computing science-gateways phenomics

Updated Aug 2, 2021
Vue

Phenomics / phenomics.github.io

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Website for the Phenomics and Machine Learning Team

berlin website phenotyping phenotypes phenomic hpo hpo-similarity hpo-translations phenomics phenotype-ontologies

Updated Jan 28, 2021
HTML

Computational-Plant-Science / spg

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Extract geometric traits from top-view images of plants.

computer-vision phenotyping image-segmentation extract-traits

Updated Aug 1, 2021
Python

drseb / phenopposites

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Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

semantics semantic-web ontology phenotyping similarity-measures phenotype ontologies phenotypes phenomics phenotype-ontologies

Updated Oct 4, 2017

Computational-Plant-Science / 3D_model_traits_demo

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Computation of root phenes from 3D point clouds.

root phenotyping phenomics phenotyping-algorithms

Updated Jul 13, 2021
Python

robail-yasrab / RSML-to-Image

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python image image-processing plants plant root image-classification phenotyping phenotype image-segmentation gt phenotype-prediction rootnav rootnav2 rsml annotataion root-phenotyping

Updated Jun 13, 2020
Python

htpmod / HTPmod

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an R package for predicting plant biomass accumulation based on image-derived parameters

plant phenotyping high-throughput

Updated Feb 5, 2018
R

obophenotype / zebrafish-phenotype-ontology-build

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🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

ontology phenotyping phenotype phenotypes hpo zebrafish phenomics phenotype-ontologies zebrafish-phenotypes

Updated Mar 13, 2018
Java

drseb / annotation-simulation

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Code to generate ontology annotated objects (e.g. HPO annotated patients)

simulation phenotyping phenotype phenotypes hpo patients hpo-annotated-patients phenotype-ontologies

Updated Nov 29, 2018
Java

picasa / rheliaphen

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Tools for phenotyping and modeling with the Heliaphen sunflower phenotyping platform.

plant phenotyping

Updated Sep 26, 2019
R

robail-yasrab / RootNav-Viewer-2.0

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RootNav Viewer 2.0: A visualization tool for Root System Architecture (RSA) using RSML.

visualization plant root phenotyping plant-growth plant-monitoring rootnav rootnav2 root-phenotyping

Updated Jul 1, 2020
C#

callahantiff / PheKnowVec

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Translational Computational Phenotyping

phenotyping omop open-biomedical-ontologies computational-phenotyping abra-collaboratory

Updated Jul 19, 2021
Python

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