Centers for Disease Control and Prevention

Repositories

SDP-Vocabulary-Service

Repository for the SDP Vocabulary Service.

JavaScript Apache-2.0 2 11 0 6 Updated Jul 27, 2020

MicrobeTrace

Forked from AABoyles/MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

bioinformatics genomics phylogenetic-trees phylogenetics epidemiology network-visualization hiv

HTML Apache-2.0 19 24 53 2 Updated Jul 23, 2020

SDP-Jenkins

Customized Jenkins Docker image for OpenShift using OCP Jenkins S2I builder

Smarty Apache-2.0 0 0 0 0 Updated Jul 22, 2020

SARS-CoV-2_Sequencing

A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

Perl Apache-2.0 39 190 0 0 Updated Jul 20, 2020

tn93.js

Tamura-Nei '93 Computation in Javascript

JavaScript Apache-2.0 1 3 2 1 Updated Jul 20, 2020

AlignmentViewer

A lightweight visualization for genetic sequence alignments

JavaScript Apache-2.0 0 1 5 1 Updated Jul 20, 2020

phlip-doc-management

JavaScript Apache-2.0 0 0 0 3 Updated Jul 20, 2020

erhms-info-manager

C# Apache-2.0 0 0 0 0 Updated Jul 17, 2020

geneflow2

GeneFlow: A Workflow Engine for Bioinformatics and Public Health Analytics

python workflow bioinformatics

Python Apache-2.0 0 0 0 0 Updated Jul 16, 2020

TidyTree

Uncompromisingly Flexible Phylogenetic Trees in Javascript

JavaScript Apache-2.0 0 3 10 2 Updated Jul 16, 2020

patristic

A Phylogenetics toolkit for Javascript

HTML Apache-2.0 0 1 4 3 Updated Jul 16, 2020

fdns-ui-react

A collection of reusable React components for quickly building modern and accessible web applications.

react ui-library fdns

JavaScript Apache-2.0 3 4 4 2 Updated Jul 16, 2020

covid19healthbot

This project collects automated screening protocols and self-checker algorithms from organizations implementing CDC screening protocols in interactive web sites, chat bots, and other technology.

covid-19

Apache-2.0 16 25 2 0 Updated Jul 15, 2020

TB_molecular_epidemiology

Algorithms for TB molecular epidemiology analysis

R Apache-2.0 0 3 0 0 Updated Jul 14, 2020

template

Template repository with rules, practices, and privacy, license, records, notices to help programs use the CDCgov GitHub organization.

boilerplate privacy collaboration practices guidance governance records-management

Apache-2.0 10 4 0 0 Updated Jul 13, 2020

NeST

Forked from shashidhar22/NeST

Jupyter Notebook 8 0 0 1 Updated Jul 7, 2020

MaRS

See Readme

5 4 1 0 Updated Jul 7, 2020

VitalConditions

0 0 0 0 Updated Jun 30, 2020

openshift-fluentd-forwarder

Shell Apache-2.0 42 18 3 2 Updated Jun 29, 2020

BMGAP

The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples

Apache-2.0 0 0 0 0 Updated Jun 26, 2020

cancer-report-validator

The Cancer Report Validator (CRV) is an interactive tool for validating the content of electronic submissions of cancer-related medical information prior to a system's communication with a public health central cancer registry.

cancer data-validation informatics hl7 cda cancer-registry clinical-document-architecture

Java Apache-2.0 2 1 2 3 Updated Jun 18, 2020

fdns-ms-hl7-utils Archived

This is the repository with the HL7 utilities service to parse, validate and generate sample HL7 data.

Java Apache-2.0 6 3 0 3 Updated Jun 18, 2020

geneflow-workflows

GeneFlow Public Reference Workflows

Apache-2.0 0 0 0 0 Updated Jun 10, 2020

CDC-Maps

React component for visualizing your data on a map of the United States based off work done for the CDC

JavaScript Apache-2.0 2 6 0 2 Updated Jun 7, 2020

COVID19-Rt

0 0 0 0 Updated Jun 7, 2020

KPIP

Forked from jiangweiyao/KPIP

Kmer Pathogen Identification Platform

Python 1 0 0 0 Updated May 27, 2020

opencdc

This is the repository for the openCDC web site. Entire site is generated from data files describing CDC Open Technology types for data, api, code, and events. All CDC programs are welcome to submit pull requests with updates and new items useful to the public health open source community.

jekyll open-source collaboration open-data center-innovation

HTML Apache-2.0 18 9 0 0 Updated May 26, 2020

PoSE

PoSE: (Pattern of Sequence Evolution) provides visualization and annotation of amino acid substitutions to help determine major patterns during sequence evolution of protein-coding sequences, hypervariable regions, or changes in dN/dS ratios.

Apache-2.0 1 3 1 0 Updated May 22, 2020

legionella_pneumophila_genomics_speciesID

Perl 0 1 0 0 Updated May 21, 2020

geneflow

GeneFlow: A Workflow Engine for Bioinformatics and Public Health Analytics

python workflow bioinformatics

Python Apache-2.0 3 5 0 0 Updated May 20, 2020