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822 followers · 162 following · 1k

Highlights

Organizations

@quinlan-lab

Sponsoring

@kortschak

Pinned

  1. slivar

    variant expressions, annotation, and filtering for great good.

    Nim 87 10

  2. mosdepth

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 315 57

  3. goleft

    goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

    Go 164 21

  4. hts-nim

    nim wrapper for htslib for parsing genomics data files

    Nim 126 19

  5. vcfanno

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 238 42

  6. somalier

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 107 13

1,007 contributions in the last year

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Contribution activity

July 2020

Created a pull request in Blosc/c-blosc2 that received 1 comment

add free_new path in test_frame.c

+1 −0 • 1 comment

Created an issue in nim-lang/Nim that received 2 comments

compiler error with json serialization (Error: internal error: invalid kind for lastOrd(tyLent))

This code: type Data* = object position*: seq[array[2, int]] when isMainModule: import json var x: Data echo %x generates this error: Hint: used co…

2 comments

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