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1,161 public repositories
matching this topic...
Official git repository for Biopython (originally converted from CVS)
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Jul 30, 2020
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Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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Jul 24, 2020
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Python
A collaboratively written review paper on deep learning, genomics, and precision medicine
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Apr 20, 2020
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HTML
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Official code repository for GATK versions 4 and up
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Jul 30, 2020
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Java
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Data intensive science for everyone.
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Jul 30, 2020
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Python
tools for working with genome variation graphs
Scalable genomic data analysis.
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Jul 30, 2020
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Scala
Python and C++ code for reading and writing genomics data.
Scripts to download genomes from the NCBI FTP servers
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Jul 29, 2020
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Python
Tools to process and analyze deep sequencing data.
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Jul 23, 2020
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Python
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
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Jul 24, 2020
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Java
C++ library and cmdline tools for parsing and manipulating VCF files
A modern genome browser built with JavaScript and HTML5.
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Jul 30, 2020
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JavaScript
Python library to handle Gene Ontology (GO) terms
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Jul 18, 2020
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Python
Python library to facilitate genome assembly, annotation and comparative genomics
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Jul 25, 2020
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Python
The next version of bwa-mem
A fast and sensitive gapped read aligner
Java utilities for Bioinformatics
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Jul 29, 2020
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Java
Efficient pythonic random access to fasta subsequences
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Jul 29, 2020
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Python
Ultra-fast and memory-efficient (meta-)genome assembler
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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May 27, 2020
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Julia
An open source platform for managing and analyzing biomedical big data
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
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Jul 11, 2020
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Python
annotate a VCF with other VCFs/BEDs/tabixed files
JavaScript VisualizationTools
A comprehensive tutorial about GWAS and PRS
Haplotype VCF comparison tools
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
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Oct 11, 2019
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Jupyter Notebook
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