ratschlab

Repositories

• immunopepper

  Code for the ImmunoPepper project
  Python 0 0 1 0 Updated Jul 10, 2020

• scim

  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  Python LGPL-3.0 1 3 0 1 Updated Jul 10, 2020

• renku-mls

  MLSchema plugin for Renku

  data-science machine-learning semantic-web knowledge-graph
  Python Apache-2.0 0 1 0 1 Updated Jun 30, 2020

• mlschema-model-converters
  Python BSD-3-Clause 0 1 5 2 Updated Jun 29, 2020

• rDiff

  Tests for Differential RNA Isoform Expression
  C 3 4 4 1 Updated Jun 19, 2020

• dpsom

  Code associated with arXiv manuscript 'DPSOM: Deep Probabilistic Clustering with Self-Organizing Maps'
  Python MIT 5 16 1 0 Updated Jun 9, 2020

• ratschlab-common

  Library of common Python code used across various projects
  Jupyter Notebook MIT 0 0 0 0 Updated Jun 8, 2020

• spladder

  Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
  Python 26 74 22 0 Updated Jun 7, 2020

• projects2019-string-embedding
  C++ 0 0 0 0 Updated Jun 7, 2020

• projects-2020-SVGD-kernel-learning

  Meta-learning of the kernel parameters for Stein Variational Gradient Descent.
  Jupyter Notebook 0 0 0 0 Updated Jun 5, 2020

• covidtracker-backend

  Forked from covidtracker-ch/backend

  COVID-19 Tracker
  Java 1 0 0 0 Updated Apr 11, 2020

• circEWS

  circEWS public code
  Python MIT 6 7 0 0 Updated Mar 9, 2020

• nextflow

  Forked from nextflow-io/nextflow

  A DSL for data-driven computational pipelines
  Groovy Apache-2.0 260 0 0 0 Updated Feb 21, 2020

• SNBNMF-mutsig-public

  Supervised Negative Binomial NMF for Mutational Signature Discovery
  Python MIT 0 1 0 0 Updated Jan 30, 2020

• SOM-VAE

  TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199
  Python MIT 19 125 0 1 Updated Jan 28, 2020

• GP-VAE

  TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155
  Python MIT 8 30 0 2 Updated Jan 11, 2020

• projects2019-boosting-bbvi-pyro
  Python MIT 0 0 3 1 Updated Dec 19, 2019

• hif_splicing_code_public

  public repo for the code used in "Characterisation of HIF-dependent alternative isoforms in pancreatic cancer"
  R 0 0 0 0 Updated Oct 31, 2019

• pancanatlas_code_public

  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  Python MIT 12 26 2 0 Updated Sep 20, 2019

• genome_graph_annotation

  Sparse Binary Relation Representations for Genome Graph Annotation

  de-bruijn-graphs genome-graph sparse-matrices binary-relations graph-annotation binary-matrices
  C++ 0 2 0 0 Updated Aug 26, 2019

• ssPATHS

  pathway scoring method, bioconductor version
  R 0 0 0 0 Updated Jul 30, 2019

• tools-gogo-gadget

  A tool to aggregate custom command line tools into one.
  Python MIT 1 1 0 0 Updated Apr 1, 2019

• graph_annotation

  Code accompanying the publication for compressed graph annotation
  C++ GPL-3.0 2 13 0 0 Updated Feb 14, 2019

• onctopus

  Onctopus code
  Python 0 0 0 0 Updated Jan 22, 2019

• toil

  Forked from DataBiosphere/toil

  A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python
  Python Apache-2.0 192 0 0 0 Updated Dec 18, 2018

• RGAN

  Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

  time-series paper medical gan mnist rnn arxiv
  Python MIT 141 423 17 1 Updated Oct 7, 2018

• boosting-bbvi
  Python MIT 5 6 0 0 Updated Aug 21, 2018

• mlhc-seminar

  Materials for a reading group on machine learning for healthcare and medicine.
  MIT 4 3 0 1 Updated Mar 29, 2018

• metannot

  Multithreaded wavelet trie construction library
  C++ GPL-3.0 1 1 0 0 Updated Mar 14, 2018

• projects2017-kG
  Python BSD-3-Clause 0 2 0 0 Updated Mar 5, 2018