Here are
220 public repositories
matching this topic...
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Versatile open-source tool for microbiome analysis
SeqAn's official repository.
Renderers and renderer extensions for JupyterLab
Updated
Jul 17, 2020
Jupyter Notebook
Efficient pythonic random access to fasta subsequences
Updated
Jul 29, 2020
Python
A Java API for high-throughput sequencing data (HTS) formats.
Updated
Jul 29, 2020
Java
Syntax highlighting for computational biology
Updated
Feb 10, 2020
Shell
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Updated
Jul 24, 2020
Python
A collection of scripts and notes related to genomics and bioinformatics
A robust and fast clustering method for amplicon-based studies
A DNA Sequence Alignment/Map (SAM) library for Clojure
Updated
Jul 29, 2020
Clojure
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Software for prediction of plasmid sequences in metagenomic assemblies
Updated
Jun 2, 2020
Python
Updated
Mar 3, 2017
Python
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Updated
Jan 14, 2020
JavaScript
VAPiD: Viral Annotation and Identification Pipeline
Updated
Feb 23, 2020
Shell
A golang package and a CLI for manipulating small k-mers (k <= 32) optional with Taxids but without frequency information
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Randomly subsample sequencing reads to a specified coverage
Updated
Jun 26, 2020
Rust
Tools for querying and analysis of genomic data
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Parse and process FASTA and FASTQ formatted files of biological sequences.
Updated
Jul 16, 2020
Julia
Simulate metagenomic short reads from one or more populations.
Updated
Jun 7, 2020
Python
MView extracts and reformats the results of a sequence database search or multiple alignment.
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Updated
Jul 18, 2020
Python
PERF is an Exhaustive Repeat Finder
Updated
May 11, 2020
HTML
Syntax highlighting for computational biology
Updated
Dec 19, 2017
Vim script
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