WebAssembly modules for genomics
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. …
Python Library for data analysis based on GMQL
RNAseq pipeline for alternative splicing junctions
Extract sequences upstream of genes in a fasta file based on coordinates listed in a gff file.
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
A beginner’s guide to Bioinformatics
program to make bed12 files from bed 6 files based on the name col of the bed6 file.
Useful NGS utilities for everyday use in the form of stand-alone tool.
Workflow to calculate the pairwise cooccurrence of genomic features (GFFs)
Predicting Tissue Specific Enhancer Activity from Epigenetic Marks and Sequence
bedtools environment containerized for singularity
Sequencing data preprocessing
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
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