Generic Model Organism Database Project

Repositories

jbrowse-components

Monorepo with JBrowse 2 web, JBrowse 2 desktop, and more.

TypeScript 7 9 216 5 Updated Aug 6, 2020

tabix-js

Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

TypeScript MIT 2 6 2 4 Updated Aug 6, 2020

jbrowse-plugin-gdc

JBrowse 2 plugin for integrating with GDC resources

JavaScript 1 1 0 2 Updated Aug 6, 2020

bgzf-filehandle

Nodejs filehandle for reading bgzip+.gzi compressed files

JavaScript MIT 1 3 2 1 Updated Aug 6, 2020

jbrowse

A modern genome browser built with JavaScript and HTML5.

bioinformatics genomics biology genome-annotation genome-browser protein-annotation

JavaScript LGPL-2.1 189 370 149 (18 issues need help) 13 Updated Aug 5, 2020

sars-cov-2-jbrowse

Repo for storing dockerfile and config for a coronavirus genome browser

Dockerfile MIT 2 1 1 0 Updated Aug 5, 2020

GenomeFeatureComponent

Forked from nathandunn/GenomeFeatureComponent

Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component

JavaScript 7 1 12 6 Updated Jul 31, 2020

cram-js

Read CRAM v3 and v2 in node or in the browser

genomics

JavaScript MIT 5 10 2 2 Updated Jul 30, 2020

bam-js

Parse BAM and BAM index files in javascript for node and the browser

JavaScript MIT 2 8 8 4 Updated Jul 30, 2020

jbrowse-registry

JBrowse Plugin Registry

HTML BSD-2-Clause 8 14 0 0 Updated Jul 30, 2020

Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

groovy apollo grails gwt jbrowse genome-annotation-editor jbrowse-plugin

Groovy 67 85 215 (5 issues need help) 0 Updated Jul 28, 2020

vcf-js

High performance VCF parser in pure JavaScript

JavaScript MIT 1 2 2 1 Updated Jul 23, 2020

nclist-js

Read JBrowse v1 nested containment list feature stores from modern JS

JavaScript MIT 0 0 0 4 Updated Jul 16, 2020

generic-filehandle

use a subset of the NodeJS promise-based file handle API to access both local and remote files

TypeScript 2 2 6 1 Updated Jul 16, 2020

indexedfasta-js

Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

JavaScript MIT 1 4 3 2 Updated Jul 16, 2020

bbi-js

Parser for bigwig and bigbed files

TypeScript MIT 1 3 7 3 Updated Jul 16, 2020

twobit-js

Read .2bit files with pure JS. Works in node or webpack.

JavaScript MIT 1 3 2 15 Updated Jul 16, 2020

gff-js

parse and format streams of GFF3, for node or webpack

genomics

JavaScript MIT 1 5 1 7 Updated Jul 16, 2020

jblast-jbconnect-hook

JBrowse/Galaxy-Blast Plugin

CSS LGPL-2.1 0 4 33 4 Updated Jul 16, 2020

ucsc-hub-js

read and write UCSC track and assembly hub files in node or the browser

JavaScript MIT 0 2 4 9 Updated Jul 10, 2020

bed-js

A parser for the BED format including autoSql support

JavaScript 0 1 2 1 Updated Jul 9, 2020

tribble-index-js

Read htsjdk tribble indexes in pure JS

JavaScript MIT 0 0 4 0 Updated Jun 18, 2020

binary-parser

Forked from rbuels/binary-parser

A fork of binary-parser for usage in GMOD data parsers

JavaScript MIT 84 1 1 7 Updated Jun 2, 2020

Chado

the GMOD database schema

PLpgSQL 18 20 46 8 Updated May 19, 2020

jbconnect

JBConnect, an optional server-side component of JBrowse

JavaScript LGPL-2.1 0 1 36 0 Updated May 16, 2020

primer3-jbconnect-hook

JavaScript LGPL-2.1 0 0 0 0 Updated May 13, 2020

demo-jbconnect-hook

JavaScript LGPL-2.1 0 0 1 0 Updated May 13, 2020

chado_tools

Chado data loaders and other tools

Perl 0 0 2 0 Updated Oct 30, 2019

docker-apollo Archived

Forked from hdzierz/docker-webapollo2

🐳 Apollo 2.X Docker Image

docker bioinformatics apollo annotation genome biocuration chado

Shell GPL-3.0 14 9 0 1 Updated Jun 18, 2019

cmap

A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

Perl GPL-2.0 0 3 1 0 Updated Feb 17, 2019