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tools for working with genome variation graphs
Modular Multi-scale Integrated Genome Graph Browser
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Updated
Feb 25, 2021
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TypeScript
Parallel Sequence to Graph Alignment
Linear-time, low-memory construction of variation graphs
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
A Go library for working with Graphical Fragment Assembly format
Handlegraph RDF writers in java for working with variation graph genome data.
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Updated
Dec 15, 2020
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Java
This is experiment to measure performance in vg recalibrate, testing different models.
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Updated
Sep 19, 2018
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Jupyter Notebook
A tool for modelling graphs of genetic variation.
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