Deplancke's Lab

Repositories

• ASAP

  ASAP : Automated Single-cell Analysis Pipeline

  visualization bioinformatics enrichment rna-seq clustering web-app gene-expression
  Java GPL-3.0 7 16 1 0 Updated May 15, 2020

• BeversLitovchenko2018

  Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"

  java bash r variant-calling ngs-analysis mitochondria dgrp
  R 0 0 0 0 Updated May 14, 2020

• BRB-seqTools

  Suite of tools for processing BRB-seq data
  Java 9 15 0 0 Updated Nov 28, 2019

• Frochaux_BouSleiman_2020
  R GPL-3.0 0 1 0 0 Updated Oct 8, 2019

• Meireles-Filho_Litovchenko2019

  Source code to support the paper: “Extensive tissue-specific expression variation and novel regulators underlying circadian behavior”

  bash r rna-seq-analysis ngs-analysis dgrp circadian-rhythms
  0 0 0 0 Updated Jan 18, 2019

• asap2_web

  Forked from fabdavid/asap2_web
  Ruby 4 0 0 0 Updated Aug 21, 2018

• Areg

  Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells
  HTML 1 2 1 0 Updated Jul 4, 2018

• SSPCI

  Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data
  R 0 3 0 0 Updated May 2, 2018

• projects

  Forked from czi-hca-comp-tools/projects

  a list of all projects
  MIT 16 0 0 0 Updated Apr 25, 2018

• ASAP_web

  Forked from fabdavid/ASAP_web

  ASAP web application
  JavaScript AGPL-3.0 1 1 0 0 Updated Jan 16, 2018

• SmartSeq2
  0 1 0 0 Updated Apr 7, 2017