Pinello Lab

Popular repositories

1. STREAM

   STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

   Jupyter Notebook 116 37

2. scATAC-benchmarking

   Benchmarking computational single cell ATAC-seq methods

   Jupyter Notebook 115 32

3. CRISPResso2

   Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

   Python 99 52

4. haystack_bio

   Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

   HTML 35 9

5. AmpUMI

   Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)

   Python 28 7

6. GRAFIMO

   GRAph-based Finding of Individual Motif Occurrences

   Python 15 2