3DGenomes

Repositories

• ngx-resizable

  Resizable Split Pane Layout

  angular layout split pane resizable
  TypeScript MIT 6 11 5 3 Updated Sep 6, 2020

• TADbit

  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…

  python mapping ngs hi-c 3d-models chromatin
  Python GPL-3.0 53 78 38 0 Updated Jun 30, 2020

• colvars

  Forked from Colvars/colvars

  Collective variables module for molecular simulation and analysis programs
  C++ LGPL-3.0 28 0 0 0 Updated Jun 23, 2020

• OligoFISSEQ

  OligoFISSEQ scripts
  Jupyter Notebook 0 1 0 0 Updated Mar 12, 2020

• TADkit

  3D Genome Browser

  javascript genome 3d-models 3d-genome-browser chromatin
  JavaScript MIT 8 23 30 (3 issues need help) 0 Updated Jan 29, 2020

• TADpole

  TADpole is a computational tool designed to identify and analyze the entire hierarchy of topologically associated domains (TADs) in intra-chromosomal interaction matrices. This is the stable version of TADpole. You can find the development version at
  R LGPL-3.0 0 5 0 0 Updated Jan 28, 2020

• binless

  Resolution-independent normalization of Hi-C data

  r rcpp cpp11 hi-c high-throughput-sequencing normalization generalized-additive-models
  C++ LGPL-3.0 1 4 4 0 Updated Aug 28, 2019

• MethodsMolBiol

  bioinformatics hi-c 3d-genome tutorial-exercises chromatin-interaction
  Jupyter Notebook GPL-3.0 1 3 0 0 Updated Mar 29, 2019

• 3DAROC

  list of notebooks for 4 days course on Hi-C data handling and 3D modeling of chromatin
  Jupyter Notebook GPL-3.0 1 1 0 0 Updated Sep 30, 2018

• IMP_BioSystem_Domain_Fly_Genome

  Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
  Python 2 0 0 0 Updated Jul 19, 2018

• angular-threejs

  Angular module implementing THREEjs
  JavaScript 5 8 0 1 Updated Mar 17, 2018

• TADkit-Viewer

  A 3D viewer for TADbit models
  JavaScript MIT 1 0 0 0 Updated Jun 19, 2017

• 3DViewerComponent

  Forked from Autodesk/3DViewerComponent

  A ThreeJS 3D Viewer Web Component composed with (Google's) Polymer
  JavaScript MIT 8 0 0 0 Updated Apr 5, 2017

• angular-d3js

  Angular module implementing D3
  JavaScript 1 2 0 0 Updated Nov 19, 2015