KCL IoPPN: NIHR BRC-MH Bioinformatics Group

Repositories

• ADR-graph

  Predicting adverse drug reactions from a knowledge graph
  Python GPL-3.0 10 15 1 0 Updated Jun 17, 2020

• NGS_Workshop_Advanced_Bioinformatics
  1 3 0 0 Updated May 14, 2020

• DNAscan

  DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

  workflow pipeline ngs next-generation-sequencing
  HTML MIT 16 31 2 1 Updated May 4, 2020

• ALSMetaAnalysis2020

  This is the repository with the material from 2020 ALS GWAS
  0 0 0 0 Updated Feb 23, 2020

• MIMIC-Vital-Extraction-SQL

  Extracting all vitals, labs, comorbidities and ventillation info from MIMIC-III
  0 0 0 0 Updated Jan 26, 2020

• ALSgeneScanner
  0 2 0 0 Updated Nov 26, 2019

• sepsis

  Forked from Honghan/sepsis

  Sepsis
  TSQL 1 0 0 0 Updated Sep 24, 2019

• sleepsight-analytics-pipeline

  Forked from wadpac/sleepsight-analytics-pipeline

  Pipeline for processing data from sleepsight wearables
  R Apache-2.0 2 0 0 0 Updated Sep 6, 2019

• brc-gate-applications

  GATE applications used by the BRC on CRIS data
  Jupyter Notebook 3 0 0 0 Updated Jun 14, 2019

• brc-gate-pharmacotherapy

  Pharmacotherapy GATE application used by the BRC on CRIS text
  Java 0 0 0 0 Updated Feb 20, 2019

• patient-flow-simulator

  Manage a simulated hospital to understand patient flow bottlenecks
  JavaScript Apache-2.0 2 7 0 0 Updated Nov 9, 2018

• CellProfiler

  Forked from CellProfiler/CellProfiler

  An open-source application for biological image analysis
  Python 253 0 0 0 Updated Oct 17, 2018

• cris.feeder

  Forked from Honghan/cris.feeder

  Feeding Gate GCP with CRIS data streaming from SQL database
  Java 1 1 0 0 Updated Jul 23, 2018

• RADAR-scripts

  Scripts for use with data collected by RADAR
  Python 0 1 0 0 Updated May 24, 2018

• brc-gate-apps
  0 0 0 0 Updated Apr 16, 2018

• brc-gate-LBD
  0 0 0 0 Updated Apr 16, 2018

• MND-DataManagementAnalysis-System

  Main repository of our data management and analysis system for ALS research
  JavaScript 1 3 3 0 Updated Apr 9, 2018

• clozapine_adr_stats

  statistical model analysis for clozapine adverse reaction prediction
  Jupyter Notebook 0 1 0 0 Updated Dec 4, 2017

• BRC-U_git_template

  The National Biomedical Research Centre Biomedical Research Centre and Dementia Unit (BRC/U) at South London and Maudsley NHS Foundation Trust and King’s College London
  0 0 0 0 Updated Oct 18, 2017

• patient-flow-simulator.

  This only exists to redirect to the actual repo: https://github.com/KHP-Informatics/patient-flow-simulator
  HTML 0 0 0 0 Updated Oct 10, 2017

• bioindocker15

  [Bio in Docker] Symposium 2015
  JavaScript 3 21 0 0 Updated Sep 26, 2017

• sleepsight-analytics

  Analysis pipeline of the SleepSight pilot study.
  Python Apache-2.0 1 1 0 0 Updated Aug 28, 2017

• HipDynamics
  Python Apache-2.0 0 2 0 0 Updated Jul 12, 2017

• ngseasy

  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

  shell docker pipeline ngs next-generation-sequencing
  Shell GPL-2.0 37 80 10 (1 issue needs help) 0 Updated Jul 10, 2017

• pyblications

  Forked from jstuczyn/pyblications

  Set of python scripts for generating formatted HTML listing of academic publications
  Python 1 1 1 0 Updated Jun 19, 2017

• psycho-env

  Forked from Honghan/napeasy-ann
  JavaScript 1 1 0 0 Updated Jun 14, 2017

• cogstack-plugin-signum

  elasticsearch natural-language-processing semantic-web spring-batch batch-processing
  Java 0 0 0 0 Updated May 9, 2017

• cogstack

  Forked from hkkenneth/turbo-laser

  Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
  HTML Apache-2.0 2 3 0 1 Updated May 9, 2017

• illumina-array-protocols

  processing illumina SNP arrays
  Shell GPL-2.0 4 11 1 0 Updated Feb 3, 2017

• NapEasy

  Forked from Honghan/NapEasy

  identifying psychometric and neuroatonomy relations in publications
  JavaScript 1 2 0 0 Updated Jan 7, 2017