Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

👩🏻‍⚕️Covid-19 estimation and forecast using statistical model; 新型冠状病毒肺炎统计模型预测 (Jan 2020)

Extensive and accessible COVID-19 data + forecasting at the county-level + hospital-level.

Modelling of the nCoV-2019 outbreak in Wuhan, China, by Jon Read, Jess Bridgen, and Chris Jewell at Lancaster University.

天池大赛疫情文本挑战赛线上第三名方案分享

Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Erdős-Rényi & Barabási-Albert; graph theory algorithms involving Gillespie, Bron Kerbosch, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, Topological Sort, DFS, BFS

COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions

Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.

Data-driven COVID-19 forecasts and detection of unreported cases

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics

Analyzing the spread of the novel Coronavirus COVID-19

SEIR epidemic model

A basic SIR model to improve my understanding on the subject.

Illustrate how to fit ODEs to time-series data in OpenBUGS with R

Matlab code for the simulation of a zombie outbreak using a compartmental model

Graph based epidemic simulations.

Age-structured model for COVID 19 transmisison

The MetaWards R package. This supports easy install of MetaWards R bindings from GitHub

A simple epidemic curve exercise in response to the latest coronavirus epidemic.

An epidemic stimulator, developed and built by brute force to learn more on biological systems.

A repository filled with my experiments in various models used in epidemiology.

Simple SIR graph model.

Explore strategies of social distancing on epidemic w/ SIR model and R - from Gandon, Lion, Day

Assignments for the course Complex networks: theory and applications

methods for inference using CTMC SIR models

Statistical dynamics of social distancing in SARS-CoV-2 as a differential game