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sequana and bioservices updates
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sequana and bioservices updates
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Arctic Code Vault Contributor

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cokelaer/README.md

Hi there

  • 🔭 I’m currently actively working on Sequana and also maintaining BioServices, Damona, Fitter, colormap, spectrum, Bioconvert and easydev.
  • I'm currently leading the bioinformatics and data management activities of the Biomics NGS platform (biomics.pasteur.fr) building pipelines and tools for production.
  • 👯 I’m looking to collaborate on BioConvert, BioServices and Damona and of course Sequana. Would you be interested to take the lead on Spectrum, fitter, colormap, please let me know.

Pinned

  1. spectrum Public

    Spectral Analysis in Python

    Python 255 78

  2. bioservices Public

    Access to Biological Web Services from Python.

    Python 202 59

  3. sequana/sequana Public

    Sequana: a set of Snakemake NGS pipelines

    Jupyter Notebook 110 26

  4. fitter Public

    Fit data to many distributions

    Python 200 31

  5. colormap Public

    Utilities to visualise and create matplotlib colormaps and various color codecs

    Jupyter Notebook 26 5

  6. bioconvert/bioconvert Public

    Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

    Python 134 31

2,451 contributions in the last year

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Contribution activity

April 2022

Created 65 commits in 13 repositories
Created 1 repository

Created a pull request in bioconda/bioconda-recipes that received 6 comments

Update bioconvert to v0.5.2

Update bioconvert to v0.5.2 Please read the guidelines for Bioconda recipes before opening a pull request (PR). If this PR adds or updates a recip…

+23 −13 • 6 comments
Opened 13 other pull requests in 6 repositories
bioconvert/bioconvert 5 merged
bioconda/bioconda-recipes 3 closed 1 merged
sequana/mapper 1 merged
sequana/sequana-wrappers 1 merged
sequana/sequana_pipetools 1 merged
sequana/depletion 1 merged
Reviewed 8 pull requests in 5 repositories
sequana/sequana-wrappers 4 pull requests
bioconvert/bioconvert 1 pull request
sequana/mapper 1 pull request
sequana/sequana_pipetools 1 pull request
cokelaer/fitter 1 pull request

Created an issue in bioconvert/bioconvert that received 1 comment

Check how is used biocode and how it is installed

1 comment
Opened 1 other issue in 1 repository
sequana/mapper 1 closed
15 contributions in private repositories Apr 1 – Apr 15

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