Image-processing software for cryo-electron microscopy

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

pytorch implementation of noise2noise for Cryo-EM image denoising

High Throughput Electron Microscopy Image Processing Software

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

Deep learning for cryo-EM maps post-processing

Transphire: Cryo-EM on the fly processing pipeline

Covariance Estimation and Denoising for Cryo-EM Images (Covariance Wiener Filtering)

A CNN for denoising cryo-EM images

[BS]物联网工程，[MS]计算机技术，python，mooc资源，机器学习，深度学习，cryo-em[冷冻电子显微镜]，3D reconstruction[三维重建]，Computational Vison。

CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.

Pre-revolution cryo-EM scripts

Utilities to help cryoEM data analysis

Software to integrate Relion GUI with Amazon Web Services, accompanied by easy command line tools. Learn more at cryoem-tools.cloud

Conventions for 3DEM software packages

Microtubule Image Processing in RELION Pipeline

Software developed to analyze how polyQ inclusion bodies interact with ER membranes in situ

3d protein model reconstruction pipeline from cryo-em particle images, developed at Yale IPAG

Step-by-step instructions for installing an Ubuntu workstation with standard cryo-em software

ResMap, Compute the local resolution of 3D density maps, (support python3 and maps in variant shape)

Cryo-EM Platform Integrates Competitive Algorithms to Meet Current Challenges

Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing

A curated list of awesome computational cryo-EM methods.

Implementation of a Bayesian approach to cryo-EM structure determination

Matlab scripts used for the analysis of light microscopy data and quantification of fibril persistence length and ER membrane curvature measurements

Plot local resolution histogram from RELION's relion_locres.mrc and mask.mrc

Authors' implementation for "Ab initio tomography with object heterogeneity and unknown viewing parameters", IEEE ICIP 2019

Research Project under the guidance of Professor Ajit Rajwade

A suite of Odd-Job scripts for cryo-em data processing.