samtools

Repositories

• htsjdk

  A Java API for high-throughput sequencing data (HTS) formats.

  java genomics ngs sequencing sam vcf dna
  Java 229 209 230 19 Updated Jun 5, 2020

• htslib

  C library for high-throughput sequencing data formats
  C 337 476 115 24 Updated Jun 5, 2020

• samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data
  C 434 924 171 21 Updated Jun 5, 2020

• hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats
  TeX 137 373 108 40 Updated Jun 4, 2020

• bcftools

  This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
  C 155 302 156 4 Updated Jun 3, 2020

• www.htslib.org

  The http://www.htslib.org/ web site
  HTML 13 5 2 1 Updated Apr 20, 2020

• c-maint

  Maintenance scripts used with the htslib/samtools/bcftools repositories
  Shell 2 3 0 1 Updated Dec 29, 2019

• tabix

  Note: tabix and bgzip binaries are now part of the HTSlib project.
  C 41 73 6 2 Updated Nov 14, 2019

• htslib-crypt4gh

  HTSlib crypt4gh plug-in
  C 0 1 1 0 Updated Oct 17, 2019

• htsjdk-next-beta

  Staging ground for the development of the next major version of HTSJDK
  Java BSD-3-Clause 2 6 21 10 Updated Mar 4, 2019

• htslib-plugins

  Plugins for use with HTSlib
  C 3 5 0 0 Updated Sep 21, 2018

• samtools.github.com

  The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites
  CSS 2 3 0 0 Updated Jun 10, 2015

• sapi

  Sequence Alignment Programming Interface
  C 0 4 0 0 Updated Mar 9, 2012

• glftools
  0 1 0 0 Created Mar 9, 2012