Pavlidis lab

The Pavlidis Lab at the University of British Columbia

Gemma Public
Genomics data re-analysis

Java 10 Apache-2.0 5 70 2 Updated Nov 25, 2021
baseCode Public
Data structures, math and statistics tools, and utilities that are often needed across projects.

Java 2 Apache-2.0 0 1 0 Updated Nov 23, 2021
GemmaDE Public
Discover biological conditions associated with differential gene expression by compiling information from >10,000 published experiments

R 2 MIT 0 6 0 Updated Nov 23, 2021
bioluigi Public
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

Python 5 Apache-2.0 0 3 0 Updated Nov 15, 2021
rnaseq-pipeline Public
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Python 9 Unlicense 2 34 (1 issue needs help) 0 Updated Nov 15, 2021
rgr Public
Researcher Gene Registry. Originally developed for the Canadian Rare Disease Models & Mechanisms Network

Java 5 2 61 3 Updated Nov 10, 2021
gemma.R Public
An R wrapper for the Gemma RESTful API

R 2 0 3 0 Updated Nov 10, 2021
GemBrow Public
The Gemma Browser

Vue 1 0 7 0 Updated Nov 4, 2021
jenkins-replication-checksum Public
Perform replication integrity checksum using Percona pt-table-checksum in a CI environment.

Shell 0 MIT 1 0 0 Updated Nov 3, 2021
gsec Public
Reusable implementation of the Spring Security framework for lab projects

Java 0 Apache-2.0 0 0 3 Updated Oct 22, 2021

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