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@stjude

St. Jude Children's Research Hospital

Finding Cures, Saving Children.

Popular repositories

  1. fqlib Public

    Library for manipulating Illumina generated FastQ files

    Rust 19 4

  2. RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 18 8

  3. A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 16 11

  4. CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 16 11

  5. cis-x Public

    Search for activating regulatory variants in the tumor genome

    Perl 12 7

  6. Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data

    Python 6 5

Repositories

  • seaseq Public

    Abraham's lab - ChipSeq Pipeline

    wdl 2 Apache-2.0 2 0 0 Updated Nov 3, 2021
  • XenoCP Public

    A cloud-based tool for mouse read cleansing in xenograft samples

    Shell 3 Apache-2.0 3 0 0 Updated Nov 3, 2021
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 16 11 7 0 Updated Oct 29, 2021
  • fqlib Public

    Library for manipulating Illumina generated FastQ files

    Rust 19 Apache-2.0 4 0 0 Updated Oct 28, 2021
  • WARDEN Public

    Source code for the WARDEN DNAnexus apps

    Python 1 0 0 0 Updated Oct 21, 2021
  • teltale Public

    Compute telomeric read fractions in a BAM file.

    C++ 2 2 0 0 Updated Oct 18, 2021
  • indelPost Public

    Python library for simple and complex indels.

    Cython 4 1 0 0 Updated Sep 28, 2021
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 18 Apache-2.0 8 1 0 Updated Sep 17, 2021
  • RNApeg Public

    RNA junction finder

    Perl 1 Apache-2.0 1 1 0 Updated Sep 17, 2021
  • ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 5 6 3 1 Updated Sep 16, 2021

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