svs

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Opencpop: A High-Quality Open Source Chinese Popular Song Database for Singing Voice Synthesis

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

A pipeline to segment tissue from the background in histological images

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)

ndn-python-svs: NDN StateVectorSync protocol python library for syncing distributed real-time applications

An application that can quickly view large images like .tif, .svs, .bif, .hdpi, .vms and .mrxs file(s).

Utilities to generate a checkerboard and build multi-layer pyramidal .svs files from Scalable Vector Graphics images.

Code for gleason grading a whole slide in 1 minute or less

GUI wrapped around anonymise label for SVS and NDPI whole slide images

A QC pipeline for SVs calls based on coverage and SNP calls

Anonymize different kinds of bio-medical data

Linked-reads based structural variant caller with barcode indexing

Convenient interface for generating tiles from Aperio SVS format images

Histopathological image processing and segmentation

Process Aperio SVS images in S3 with vips/openslide.