The Blue Brain Project

Repositories

• nmodl

  Code Generation Framework For NEURON MODeling Language

  hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
  C++ 6 20 97 (14 issues need help) 2 Updated Sep 16, 2020

• nexus-web

  Nexus Web is the interface of Blue Brain Nexus

  react redux nodejs javascript typescript nexus storybook
  TypeScript 2 8 0 2 Updated Sep 16, 2020

• nexus

  Blue Brain Nexus - A knowledge graph for data-driven science

  scala nexus provenance knowledge-graph shacl
  Scala Apache-2.0 44 156 257 5 Updated Sep 16, 2020

• spack

  Forked from spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
  Python 1,046 6 2 (1 issue needs help) 12 Updated Sep 16, 2020

• NeuroR

  A collection of tools to repair morphologies
  AGS Script LGPL-3.0 2 3 0 1 Updated Sep 16, 2020

• nexus-tests

  Nexus Tests and Benchmarks
  Scala Apache-2.0 5 0 0 1 Updated Sep 16, 2020

• Brayns

  Visualizer for large-scale and interactive ray-tracing of neurons

  python cloud async interactive websockets visualisation neuroscience
  C++ 40 217 18 1 Updated Sep 16, 2020

• CoreNeuron

  Simulator optimized for large scale neural network simulations.

  neural-network hpc neuroscience simulation-framework neuron supercomputing compartmental
  C++ BSD-3-Clause 23 62 61 (1 issue needs help) 7 Updated Sep 15, 2020

• NeuroMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

  morphologies neurons blender-addon neural-modeling mesh-reconstruction soma-reconstruction morphology-analysis
  Python 15 64 27 (3 issues need help) 0 Updated Sep 15, 2020

• MorphIO

  A python and C++ library for reading and writing neuronal morphologies

  morphology neurons neuron
  C++ LGPL-3.0 6 16 22 (1 issue needs help) 7 Updated Sep 15, 2020

• Brion

  Blue Brain C++ File IO Library

  synapse
  C++ 21 17 12 1 Updated Sep 15, 2020

• libsonata

  A python and C++ interface to the SONATA format

  simulation sonata modelling circuit
  C++ LGPL-3.0 8 3 18 (3 issues need help) 3 Updated Sep 15, 2020

• snap

  The Blue Brain Pythonic Simulation and Network Analysis Productivity layer

  analysis simulation modeling
  Python LGPL-3.0 2 7 4 3 Updated Sep 15, 2020

• NeuroM

  Neuronal Morphology Analysis Tool

  python morphologies neurons
  Jupyter Notebook BSD-3-Clause 39 64 41 11 Updated Sep 15, 2020

• Brion-wheels
  Shell 0 0 0 0 Updated Sep 15, 2020

• MVDTool

  Parser and command line tool for MVD file format
  C++ 6 1 1 2 Updated Sep 14, 2020

• arc-platform
  HTML 0 0 0 0 Updated Sep 14, 2020

• HighFive

  HighFive - Header-only C++ HDF5 interface
  C++ BSL-1.0 78 280 39 (1 issue needs help) 2 Updated Sep 9, 2020

• neuromapp

  The neuromapp library reproduces the algorithms of the main software of the BBP as a collection of mini-apps
  C++ 14 4 2 1 Updated Sep 4, 2020

• BluePyOpt

  Blue Brain Python Optimisation Library

  python cross-platform genetic-algorithm biological-simulations neuroscience computational-neuroscience evolutionary-algorithms
  Python 66 127 6 3 Updated Aug 31, 2020

• MOOC-hippocampus-network-simulation-2019
  Jupyter Notebook 1 5 0 0 Updated Aug 31, 2020

• hpc-coding-conventions
  Python 1 6 9 1 Updated Aug 30, 2020

• nexus-forge

  Building and Using Knowledge Graphs made easy

  data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering
  Python 7 9 12 2 Updated Aug 24, 2020

• sphinx-bluebrain-theme

  The Blue Brain Project's documentation theme.
  Python MIT 0 1 1 0 Updated Aug 20, 2020

• morph-tool
  AGS Script LGPL-3.0 2 0 3 2 Updated Aug 19, 2020

• mod2c

  Converter for mod files to C code
  C BSD-3-Clause 4 2 2 0 Updated Aug 15, 2020

• BluePyEfe

  BluePyEfe: Blue Brain Python E-feature extraction
  Python 4 6 0 0 Updated Aug 10, 2020

• neuron-docker-spack

  Spack Based Docker Image for NEURON Simulations
  Dockerfile 1 1 1 0 Updated Aug 9, 2020

• SimulationTutorials

  Public tutorials around electrophysiological simulations

  course-materials tutorials computational-neuroscience
  Jupyter Notebook 18 20 1 0 Updated Aug 5, 2020

• sbt-nexus Archived

  An SBT Plugin for building Nexus Scala based projects

  scala sbt nexus
  Scala Apache-2.0 4 3 0 0 Updated Aug 4, 2020