Survival analysis in Python

Image-processing software for cryo-electron microscopy

RAxML Next Generation: faster, easier-to-use and more flexible

Efficient phylogenomic software by maximum likelihood

Maximum likelihood demultiplexing

CmdStanR: the R interface to CmdStan

Gauss Naive Bayes in Python From Scratch.

A pipeline to select optimal markers for microbial phylogenomics, population genetics and genomic taxonomy

spatialreg: spatial models estimation and testing

R package that provides estimation methods for Gravity Models

CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

Python notebooks for my graduate class on Detection, Estimation, and Learning. Intended for in-class demonstration. Notebooks illustrate a variety of concepts, from hypothesis testing to estimation to image denoising to Kalman filtering. Feel free to use or modify for your instruction or self-study.

Scripts for file processing and analysis in phylogenetics and phylogeography

Perform template likelihood fits on binned datasets to extract contribution to the dataset from different processes .

A utility library for performing amplitude analysis on particle physics data.

Phylogenetic analysis of genetic data

Maximum a posteriori Point Emitter Localization -- High-performance, parallel, robust, cross-platform localization for EMCCD and SCMOS microscopy.

S2Bstar - 쇼핑몰 상품 카테고리 분류 대회 (잠정 순위 3위 - 2019.01.07 기준)

Ancestor character reconstruction and visualisation for rooted phylogenetic trees

An R package for maximum likelihood estimation of univariate densities.

MBEToolbox: Matlab toolbox for molecular evolution

Markov-Switching State-Space Models

Partial Label Learning based on GMM

Shell script pipeline for inferring ML gene trees for many loci (e.g. genomic RAD loci)

An R package to perform Maximum Likelihood analysis using R expressions

Miramare healpix analysis tools and a composable maximum likelihood component separation technique.

R package for mixed-effects REML incorporating Generalized Inverses

Statistical tools for toroidal diffusions. Software companion for "Langevin diffusions on the torus: estimation and applications"

Formulate likelihood problems and solve them with maximum likelihood estimation (MLE)