#

epidemiology

Here are 337 public repositories matching this topic...

WorldHealthOrganization / app

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COVID-19 App

dart firebase epidemiology appengine-java flutter coronavirus covid-19

Updated Sep 13, 2020
Dart

awesome-coronavirus

soroushchehresa / awesome-coronavirus

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🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

awesome corona awesome-list epidemiology 2019-ncov 2019ncov coronavirus coronavirus-info covid-19 covid19 sars-cov-2 covid19-data awesome-corona awesome-coronavirus 2019-ncov-data

Updated Sep 13, 2020
JavaScript

seirsplus

ryansmcgee / seirsplus

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Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

epidemiology epidemics epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid sars-cov-2

Updated Aug 24, 2020
Python

COVID-19-electronic-health-system / Corona-tracker

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Open

[FEAT] Abstract away depunctuation in python scripts

2

SomeMoosery commented May 13, 2020

⚠️ IMPORTANT: Please fill out this template to give us as much information as possible to consider/implement the feature.

Prerequisites

check this box if you have completed the following:
- Reviewed the contributing guidelines and [support](https://github.com/COVID-19-electronic-healt

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good first issue tech debt

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[FEAT] Add Dialog on Survey Completion

5

CodeForPhilly / chime

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COVID-19 Hospital Impact Model for Epidemics

epidemiology epidemics code-for-america penn covid-19 code-for-philly

Updated May 20, 2020
Python

DataForScience / Epidemiology101

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Epidemic Modeling for Everyone

python blog medium modeling epidemiology covid-19

Updated Aug 16, 2020
Jupyter Notebook

statnet / EpiModel

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Mathematical Modeling of Infectious Disease Dynamics

network-graph agent-based-modeling epidemiology epidemics infectious-diseases

Updated Sep 7, 2020
R

lindbrook / cholera

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R Package for Analyzing John Snow's 1854 Cholera Map

r data-visualization public-health epidemiology voronoi datasets cholera voronoi-polygons john-snow triangulation-delaunay

Updated Jul 30, 2020
R

IFRCGo / cbs

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Open

Can not add a new volunteer with incomplete data collector information

RFMoore commented Aug 15, 2019

Describe the bug
All "Add a Volunteer" data fields are mandatory. All fields should not be a requirement (in current design, particularly geographic information).

Some data fields (right now), such as administrative boundaries are very difficult to remember as text fields (e.g. regions, districts, village). Implies that when trying to rapidly add a volunteer, I am adding bogus informati

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Reporting good first issue

Open

When looking at ONLY success or error or unknown number in the platform it should be possible to export ONLY success, error and unknown numbers

1

Open

[Country overview] Show total number of case reports

1

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jisungk / RIDDLE

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Race and ethnicity Imputation from Disease history with Deep LEarning

machine-learning bioinformatics deep-learning biology computational-biology neural-networks imputation epidemiology

Updated Jul 17, 2018
Python

wxwx1993 / PM_COVID

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Public Available Code and Data to Reproduce Analyses in "Exposure to air pollution and COVID-19 mortality in the United States".

epidemiology air-pollution covid-19

Updated Sep 8, 2020
R

InstituteforDiseaseModeling / EMOD

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Source files for building the IDM EMOD disease transmission model.

modeling idm stochastic epidemiology malaria hiv

Updated Apr 10, 2019
C++

Python-for-Epidemiologists

pzivich / Python-for-Epidemiologists

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Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3

python tutorial epidemiology causal-inference

Updated Aug 15, 2020
Jupyter Notebook

COVID-19-data

starschema / COVID-19-data

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Unpivoted and cleaned data sets on the COVID-19 pandemic

epidemiology publichealth virology coronavirus covid-19

Updated Aug 1, 2020
Jupyter Notebook

zEpid

pzivich / zEpid

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Epidemiology analysis package

data-science tmle epidemiology odds-ratio g-formula risk-ratio ipw inverse-probability-weights epidemiology-analysis risk-difference aipw g-computation targeted-maximum-likelihood incidence-rate-ratio g-estimation

Updated Aug 3, 2020
Python

thoughtworks / epirust

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An agent-based epidemiology simulation framework built in Rust

rust agent-based-modeling epidemiology agent-based-simulation

Updated Sep 3, 2020
Rust

seandavi / sars2pack

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Open

Interesting package for looking at phylogenetics

seandavi commented Sep 8, 2020

Inference of transmission tree from a dated phylogeny

https://cran.r-project.org/web/packages/TransPhylo/vignettes/infer.html

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documentation enhancement good first issue

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[New Data Resource] Florida DOH line list

Open

[New Data Resource] CDC Hospitalization daily estimates

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eebrown / data2019nCoV

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COVID-19 Pandemic Data R Package

data world r canada dataset epidemiology ontario who rpackage ncov coronavirus ncov-2019 covid-19 covid covid-data situation-reports transcribed-data

Updated Aug 29, 2020
R

simonrharris / SKA

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Split Kmer Analysis

genomics epidemiology bacterial-genomes

Updated Jan 23, 2019
C++

reichlab / flusight

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Influenza forecasts visualizer

statistics wiki prediction visualizer forecasting epidemiology influenza-forecasts-visualizer cdc-flusight-challenge predictions influenza

Updated Sep 9, 2020
JavaScript

ImpulsoGov / farolcovid

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🚦

🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19

data-science data statistics epidemiology social-good streamlit covid-19

Updated Sep 12, 2020
Jupyter Notebook

Circuitscape / Circuitscape.jl

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Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

julia julia-language epidemiology sparse-linear-systems movement-ecology landscape-ecology circuit-analysis climate-change animal-movement forest-fire landscape-genetics

Updated Sep 2, 2020
Julia

ecohealthalliance / EpiTator

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EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

nlp geonames spacy epidemiology disease-surveillance toponym-resolution

Updated May 4, 2020
Python

Covid-19-Tracker

ankithans / Covid-19-Tracker

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This is an Covid-19 tracker especially made for India

tracker dart api epidemiology flutter dartlang coronavirus-tracking covid-19 covid-api covid-data covid-19-india

Updated Jul 25, 2020
Dart

UNU-Macau / kendrick

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Domain-Specific Modeling for Epidemiology

dsl smalltalk pharo epidemiology mathematical-modelling pharo-smalltalk model-driven-engineering infectious-diseases

Updated Aug 31, 2020
Smalltalk

tirthajyoti / Covid-19-analysis

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Analysis with Covid-19 data

visualization python data-science machine-learning analytics numpy modeling epidemiology object-oriented-programming pandemic coronavirus covid-19 covid-data covid19-data

Updated May 7, 2020
Jupyter Notebook

kausaltech / reina-model

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Agent-based simulation model for COVID-19 spread in society and patient outcomes

simulation agent-based-modeling epidemiology agent-based-simulation covid-19

Updated Sep 4, 2020
Python

CDCgov / MicrobeTrace

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The Visualization Multitool for Molecular Epidemiology and Bioinformatics

bioinformatics genomics phylogenetic-trees phylogenetics epidemiology network-visualization hiv cdc phylogenomics phylogeny sequence-alignment genomic-data-analysis genomics-visualization pathogens

Updated Sep 4, 2020
HTML

pennsignals / chime_sims

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Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.

epidemiology epidemics penn covid-19 covid covid19

Updated Aug 5, 2020
Jupyter Notebook

spiros / chronological-map-phenotypes

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Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.

epidemiology icd-10 phenotype electronic-health-record health-informatics read-code

Updated Jun 22, 2020

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