Differential expression analysis for single-cell RNA-seq data.

integrated RNA-seq Analysis Pipeline

Brings transcriptomics to the tidyverse

Explore and share your scRNAseq clustering results

Compare different differential abundance and expression methods

Interactive visualizations for differential expression

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

Welcome to the website and github repository for the Introduction to Genomic Analysis Workshop Series, taught by Phillip Richmond and supported by Compute Canada, WestGrid, University of British Columbia Advanced Research Computing, and BC Children's Hospital Evidence 2 Innovation.

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

ASAP : Automated Single-cell Analysis Pipeline

Make rapid visualizations of RNA-seq data in R

A robust model for quantitative comparison of ChIP-Seq data sets.

Tutorial for the analysis of scRNA-seq data in R

Discrete Distributional Differential Expression

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

Porting DESeq2 and DEXSeq into python via rpy2

Fit generalized linear models in python.

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Automated differential expression analysis for Illumina beadarrays (HT12 V4 arrays).

Code and manuscript files for Aaron's plate effect paper.

Collection of R-apps for VisR software

An R package to plot interactive three-way differential expression analysis

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

CSBB - Computational Suite For Bioinformaticians and Biologists

MOOMIN is a tool for analysing differential expression data

R package for performance assessment and comparison for survival analysis

NASA GeneLab API wrapper