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@berenslab

Berens Lab @ University of Tübingen

Data Science lab at the Institute of Ophthalmic Research, University of Tübingen

Popular repositories

  1. rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 101 34

  2. uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 59 21

  3. neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 57 7

  4. MorphoPy Public

    Jupyter Notebook 27 6

  5. umi-normalization Public

    Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

    Jupyter Notebook 20 2

  6. RFEst Public

    A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.

    Python 17 3

Repositories

  • ubuntu_quick_setup Public
    Shell 0 0 0 0 Updated Jan 25, 2022
  • sBNN Public

    A sparse bottleneck neural network to predict electrophysiological properties of neurons from their gene expression.

    Jupyter Notebook 2 GPL-3.0 0 0 0 Updated Jan 25, 2022
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    Python 0 AGPL-3.0 0 0 0 Updated Jan 24, 2022
  • morphvae Public

    MorphVAE: Generating Neural Morphologies from 3D-Walks

    Jupyter Notebook 2 GPL-3.0 0 1 0 Updated Jan 14, 2022
  • hc-connectivity Public

    Code related to Behrens et al. 2021

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 7, 2021
  • ne-spectrum Public

    A Unifying Perspective on Neighbor Embeddings along the Attraction-Repulsion Spectrum

    Python 15 0 0 0 Updated Dec 3, 2021
  • neuroprobnum Public

    Probabilistic numerics for common neuroscience models.

    Jupyter Notebook 2 GPL-3.0 0 0 0 Updated Dec 1, 2021
  • RFEst Public

    A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.

    Python 17 GPL-3.0 3 0 (1 issue needs help) 0 Updated Nov 15, 2021
  • cone_colour_tuning Public
    Jupyter Notebook 2 GPL-3.0 1 0 0 Updated Nov 3, 2021
  • mini-atlas Public

    Phenotypic variation of transcriptomic cell types in mouse motor cortex

    Jupyter Notebook 11 7 0 0 Updated Oct 4, 2021
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