2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)

Unpivoted and cleaned data sets on the COVID-19 pandemic

Infectious Disease Sequencing Platform

VAPiD: Viral Annotation and Identification Pipeline

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

Reconstruction and analysis of viral and host genomes at multi-organ level

A software to detect virome-wide integrations

genetic distance plotting for recombination events analysis

Corona Virus 3D

Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>

Papers discussed on various shows on MicrobeTV

Circular particle counter for electron microscope images

🔬 A Ruby library for carefully refactoring critical paths.

Can viral infections change the hormonal levels?

A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)

BioMight - Human Biological Animation Engine

NGS data analysis scripts for HBV elimination research group

ELISA Software 2.0

workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.

NGS data analysis scripts for HBV elimination research group