Victor Chang Cardiac Research Institute

Spliceogen

Sierra

single cell polyA

Falco

A quick and flexible single-cell RNA-seq processing framework on the cloud

dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

VPOT

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circRNA and parental transcripts

FlowGrid

ConanVarvar

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data

Scavenger

A pipeline for recovery of unaligned reads utilising similarity with aligned reads

starmap

Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual reality

GEOracle

XGSA

XGSA: a statistical method for cross-species gene set analysis

GEOraclePlus

SeqVis

Hactive

iOS application for extraction and development of heart rate dynamic profiles

Owl

Automated Denoising Application utilising ITV Algorithm and Image Registration

motif-discovery-pipeline

FlowGrid_compare

SPAGI

Signalling Pathway Analysis for putative Gene regulatory network Identification

CardiacProfileR

CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

scluster

Sparse supervised clustering

C3

C3: An R package for cross-species compendium-based cell-type identification

CIDR

Clustering through Imputation and Dimensionality Reduction

SVPV

Structural Variant Prediction Viewer

CIDR-comparisons

CIDR-examples

Examples relating to the CIDR package.

PAD

PAD (Proximal and Distal) clustering

PBrowse

A real-time collaborative genome browser