Quantitative Image Informatics for Cancer Research

Repositories

• dcmqi

  dcmqi (DICOM for Quantitative Imaging) is a free, open source library that can help with the conversion between imaging research formats and the standard DICOM representation for image analysis results

  dicom quantitative-imaging imaging-informatics converters cancer-imaging-research medical-image-computing 3d-slicer
  C++ BSD-3-Clause 39 125 68 (1 issue needs help) 4 Updated Nov 6, 2020

• QuantitativeReporting

  Segmentation-based measurements with DICOM import and export of the results.

  dicom quantitative-imaging medical-image-computing nciitcr nci-itcr nci-qin 3d-slicer-extension
  Python 17 12 23 0 Updated Nov 6, 2020

• SlicerGCPSetup
  0 1 2 0 Updated Nov 1, 2020

• lidc2dicom

  Scripts for converting TCIA LIDC-IDRI collection derived data into standard DICOM representation from project-specific XML format.
  Jupyter Notebook 6 6 3 0 Updated Oct 27, 2020

• dcmqi-guide

  Learning materials for https://github.com/qiicr/dcmqi

  dicom quantitative-imaging imaging-informatics converters medical-image-computing
  JavaScript 1 2 0 0 Updated Sep 11, 2020

• DICOM4QI

  DICOM4QI is an open demonstration and connectathon with the purpose of promoting and improving the use of DICOM for exchanging the quantitative image analysis results
  10 2 5 0 Updated Aug 21, 2020

• atom-dicom-dump

  Atom editor package for examining the content of DICOM files

  atom viewer dicom dcmtk dcmdump dsrdump
  CoffeeScript MIT 1 4 3 (1 issue needs help) 0 Updated May 28, 2020

• dicom3tools

  This is an UN-OFFICIAL repository of the dicom3tools library by David Clunie. Official location: http://www.dclunie.com/dicom3tools/workinprogress/. Tags correspond to snapshots of the source code published at the original location.

  dicom medical-imaging validators
  Smarty 2 3 0 0 Updated May 21, 2020

• PET-IndiC

  UIowa QIN PET volume indices measurement tool for 3D Slicer

  3d-slicer 3d-slicer-extension
  Python 1 0 1 0 Updated May 21, 2020

• SlicerLayoutButtons
  Python 1 0 1 0 Updated May 10, 2020

• SlicerDevelopmentToolbox

  API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.

  events development mixins decorators helpers widgets slicer
  Python 6 6 4 0 Updated May 10, 2020

• SlicerPETPhantomAnalysis

  3D Slicer Extension for Analysis of Uniform Cylinder Phantom PET scans

  3d-slicer-extension
  C++ 0 0 0 0 Updated Apr 8, 2020

• PETLiverUptakeMeasurement

  3d-slicer nci-qin 3d-slicer-extension
  Python 0 0 0 0 Updated Feb 21, 2020

• PETTumorSegmentation

  3D Slicer Extension for PETTumorSegmentation

  3d-slicer nci-qin 3d-slicer-extension
  C++ 6 8 2 1 Updated Feb 20, 2020

• dcmtk-dcmqi

  This is a version of DCMTK that is customized for dcmqi CI (see dcmqi branch)
  C++ 2 0 0 0 Updated Jan 20, 2020

• ITK-dcmqi

  This is a customized version of ITK to support dcmqi CI. It was manually and ugly stripped down to reduce build time and make continuous integration feasible.
  C++ Apache-2.0 0 0 0 0 Updated Jan 20, 2020

• Slicer-PETDICOMExtension

  3D Slicer extension containing tools for importing DICOM PET series

  3d-slicer 3d-slicer-extension
  C++ 8 10 0 0 Updated Dec 30, 2019

• qiicr.github.io

  Web site for QIICR at http://qiicr.org
  JavaScript MIT 3 1 0 0 Updated Dec 11, 2019

• TCIABrowser

  3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

  3d-slicer tcia-dac nci-qin 3d-slicer-extension
  Python 4 7 9 0 Updated Dec 4, 2019

• dcm2tables

  sql dicom rdb nci-itcr nci-qin nci-gdc
  Python 3 1 4 0 Updated Jul 18, 2019

• dicom4miccai-handson

  Supporting materials for the MICCAI 2017 DICOM tutorial. See accompanying documentation at https://qiicr.gitbook.io/dicom4miccai-handson/

  tutorial handson dicom nci-itcr nci-qin
  Jupyter Notebook BSD-3-Clause 2 3 0 0 Updated Jun 5, 2019

• QIN-PROSTATE-Repeatability-Radiomics
  Jupyter Notebook MIT 9 9 0 0 Updated Feb 19, 2019

• dicom4miccai

  Web site for the DICOM4MICCAI tutorial at the MICCAI conference (2017 and 2018)

  dicom nci-itcr
  HTML MIT 2 1 0 0 Updated Nov 14, 2018

• LongitudinalPETCT

  Forked from paulcm/LongitudinalPETCT

  Longitudinal PET/CT Analysis Module for Slicer 4

  3d-slicer 3d-slicer-extension
  C++ 7 3 5 1 Updated Nov 12, 2018

• CI4CC-Spring2016-ASW

  Web site for the Academic Technology Development in Cancer Research workshop at CI4CC Spring 2016 Symposium
  HTML 0 0 0 0 Updated Jul 12, 2018

• DSC_Analysis

  Analysis of Dynamic Susceptibility Contrast (DSC) MRI
  C++ 1 2 1 0 Updated Jun 4, 2018

• pydicom

  Forked from pydicom/pydicom

  Read, modify and write DICOM files with python code
  Python 346 0 0 0 Updated Apr 24, 2018

• PkModeling

  Forked from millerjv/PkModeling

  Slicer Extension providing pharmacokinetic modeling
  C++ 15 0 4 0 Updated Apr 3, 2018

• dcmheat
  Python 4 2 2 0 Updated Mar 5, 2018

• QuantitativeReporting-guide

  Learning materials for https://github.com/QIICR/QuantitativeReporting
  CSS 0 0 0 0 Updated Sep 13, 2017